Construct: ORF ccsbBroad304_09075

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006553.1_s304c1, BRDN0000403046
Derived from:
ccsbBroadEn_09075
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NIPA2 (81614)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09075
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81614 NIPA2 NIPA magnesium transporter 2 NM_001008860.2 99.8% 99.7% 6C>T;907A>G
2 human 81614 NIPA2 NIPA magnesium transporter 2 NM_001008892.2 99.8% 99.7% 6C>T;907A>G
3 human 81614 NIPA2 NIPA magnesium transporter 2 NM_001184889.1 99.8% 99.7% 6C>T;907A>G
4 human 81614 NIPA2 NIPA magnesium transporter 2 NM_030922.6 99.8% 99.7% 6C>T;907A>G
5 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272546.3 99.8% 99.7% 6C>T;907A>G
6 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272547.4 99.8% 99.7% 6C>T;907A>G
7 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272548.3 99.8% 99.7% 6C>T;907A>G
8 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272550.3 99.8% 99.7% 6C>T;907A>G
9 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272552.4 99.8% 99.7% 6C>T;907A>G
10 human 81614 NIPA2 NIPA magnesium transporter 2 XM_005272553.5 99.8% 99.7% 6C>T;907A>G
11 human 81614 NIPA2 NIPA magnesium transporter 2 XM_006720364.2 99.8% 99.7% 6C>T;907A>G
12 human 81614 NIPA2 NIPA magnesium transporter 2 XM_006720365.3 99.8% 99.7% 6C>T;907A>G
13 human 81614 NIPA2 NIPA magnesium transporter 2 XM_006720366.4 99.8% 99.7% 6C>T;907A>G
14 human 81614 NIPA2 NIPA magnesium transporter 2 XM_011543877.2 99.8% 99.7% 6C>T;907A>G
15 human 81614 NIPA2 NIPA magnesium transporter 2 XM_011543878.3 99.8% 99.7% 6C>T;907A>G
16 human 81614 NIPA2 NIPA magnesium transporter 2 XM_011543879.3 99.8% 99.7% 6C>T;907A>G
17 human 81614 NIPA2 NIPA magnesium transporter 2 XM_011543880.3 99.8% 99.7% 6C>T;907A>G
18 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022645.1 99.8% 99.7% 6C>T;907A>G
19 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022646.1 99.8% 99.7% 6C>T;907A>G
20 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022647.1 99.8% 99.7% 6C>T;907A>G
21 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022648.1 99.8% 99.7% 6C>T;907A>G
22 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022649.2 99.8% 99.7% 6C>T;907A>G
23 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022650.2 99.8% 99.7% 6C>T;907A>G
24 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022651.2 99.8% 99.7% 6C>T;907A>G
25 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022652.2 99.8% 99.7% 6C>T;907A>G
26 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022653.2 99.8% 99.7% 6C>T;907A>G
27 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022654.2 99.8% 99.7% 6C>T;907A>G
28 human 81614 NIPA2 NIPA magnesium transporter 2 XM_024450083.1 99.8% 99.7% 6C>T;907A>G
29 human 81614 NIPA2 NIPA magnesium transporter 2 NM_001008894.2 94.5% 94.1% 6C>T;139_140ins57;850A>G
30 human 81614 NIPA2 NIPA magnesium transporter 2 NM_001184888.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
31 human 81614 NIPA2 NIPA magnesium transporter 2 XM_006720367.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
32 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022655.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
33 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022656.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
34 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022657.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
35 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022658.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
36 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022659.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
37 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022660.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
38 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022661.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
39 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022662.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
40 human 81614 NIPA2 NIPA magnesium transporter 2 XM_017022663.1 94.5% 94.1% 6C>T;139_140ins57;850A>G
41 mouse 93790 Nipa2 non imprinted in Prader-Wil... NM_001256130.1 90.2% 95.2% (many diffs)
42 mouse 93790 Nipa2 non imprinted in Prader-Wil... NM_001256131.1 90.2% 95.2% (many diffs)
43 mouse 93790 Nipa2 non imprinted in Prader-Wil... NM_001256132.1 90.2% 95.2% (many diffs)
44 mouse 93790 Nipa2 non imprinted in Prader-Wil... NM_023647.6 90.2% 95.2% (many diffs)
45 mouse 93790 Nipa2 non imprinted in Prader-Wil... XM_006541324.3 90.2% 95.2% (many diffs)
46 mouse 93790 Nipa2 non imprinted in Prader-Wil... NM_001256133.1 73.2% 77.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1146
ORF length:
1080
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag tcaggggcgt ggaaaatatg acttctatat tggtctggga ttggctatga
121gctccagcat tttcattgga ggaagtttca ttttgaaaaa aaagggcctc cttcgacttg
181ccaggaaagg ctctatgaga gcaggtcaag gtggccatgc atatcttaag gaatggttgt
241ggtgggctgg actgctgtca atgggagctg gtgaggtggc caacttcgct gcgtatgcgt
301ttgcaccagc cactctagtg actccactag gagctctcag cgtgctagta agtgccattc
361tttcttcata ctttctcaat gaaagactta atcttcatgg gaaaattggg tgtttgctaa
421gtattctagg atctacagtt atggtcattc atgctccaaa ggaagaggag attgagactt
481taaatgaaat gtctcacaag ctaggtgatc caggttttgt ggtctttgca acccttgtgg
541tcattgtggc cttgatatta atcttcgtgg tgggtcctcg ccatggacag acaaacattc
601ttgtgtacat aacaatctgc tctgtaatcg gcgcgttttc agtctcctgt gtgaagggcc
661tgggcattgc tatcaaggag ctgtttgcag ggaagcctgt gctgcggcat cccctggctt
721ggattctgct gctgagcctc atcgtctgtg tgagcacaca gattaattac ctaaataggg
781ccctggatat attcaacact tccattgtga ctccaatata ttatgtattc tttacaacat
841cagttttaac ttgttcagct attcttttta aggagtggca agatatgcct gttgacgatg
901tcattggtac tttgagtggc ttctttacaa tcattgtggg gatattcttg ttgcatgcct
961ttaaagacgt cggctttagt ctagcaagtc tgcctgtgtc ttttcgaaaa gacgagaaag
1021caatgaatgg caatctctct aatatgtatg aagttcttaa taataatgaa gaaagcttaa
1081cctgtggaat cgaacaacac actggtgaaa atgtctcccg aagaaatgga aatctgacag
1141ctttttaccc aattttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1201gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1261acctctggat ta

Download FASTA (ORF) (Full)

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