Construct: ORF ccsbBroad304_09098

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011388.1_s304c1, BRDN0000403598
Derived from:
ccsbBroadEn_09098
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KATNAL2 (83473)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09098
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83473 KATNAL2 katanin catalytic subunit A... NM_031303.3 99.9% 99.7% 263G>A
2 human 83473 KATNAL2 katanin catalytic subunit A... XM_017026030.2 99.7% 99.5% 70_71insCAG;260G>A
3 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353903.1 91.5% 91.4% 0_1ins117;146G>A
4 human 83473 KATNAL2 katanin catalytic subunit A... XM_005258361.3 91.5% 91.4% 0_1ins117;146G>A
5 human 83473 KATNAL2 katanin catalytic subunit A... XM_017026031.1 91.5% 91.4% 0_1ins117;146G>A
6 human 83473 KATNAL2 katanin catalytic subunit A... NM_001367621.1 86.5% 86.4% 1_216del;479G>A
7 human 83473 KATNAL2 katanin catalytic subunit A... XM_006722554.4 86.5% 86.4% 1_216del;479G>A
8 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353904.1 84.4% 84.3% 0_1ins117;146G>A;391_392ins99
9 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353899.1 82.5% 82.4% 1_294del;557G>A
10 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353900.1 82.3% 82.2% 1_294del;364_365insCAG;554G>A
11 human 83473 KATNAL2 katanin catalytic subunit A... XM_017026028.2 71% 68.2% (many diffs)
12 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353905.1 69.5% 65% (many diffs)
13 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353906.1 69.5% 65% (many diffs)
14 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353907.1 69.2% 65.9% (many diffs)
15 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353901.1 67.5% 63.6% (many diffs)
16 human 83473 KATNAL2 katanin catalytic subunit A... XM_011526219.3 66.3% 56.2% (many diffs)
17 human 83473 KATNAL2 katanin catalytic subunit A... XM_011526220.2 64.5% 60.7% (many diffs)
18 human 83473 KATNAL2 katanin catalytic subunit A... XM_011526221.3 63.9% 60.3% (many diffs)
19 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353908.1 62.7% 58.1% (many diffs)
20 human 83473 KATNAL2 katanin catalytic subunit A... XM_011526223.3 61.1% 59.1% (many diffs)
21 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353902.1 58.9% 54.9% (many diffs)
22 human 83473 KATNAL2 katanin catalytic subunit A... NM_001353909.1 58.5% 56.1% (many diffs)
23 human 83473 KATNAL2 katanin catalytic subunit A... NR_148563.1 32.9% (many diffs)
24 human 83473 KATNAL2 katanin catalytic subunit A... XR_001753286.2 21.4% (many diffs)
25 human 83473 KATNAL2 katanin catalytic subunit A... XR_002958187.1 18.9% (many diffs)
26 mouse 71206 Katnal2 katanin p60 subunit A-like 2 XM_011247073.1 75.4% 77.1% (many diffs)
27 mouse 71206 Katnal2 katanin p60 subunit A-like 2 XM_006526438.3 72.9% 74.7% (many diffs)
28 mouse 71206 Katnal2 katanin p60 subunit A-like 2 XM_006526437.3 72.8% 74.4% (many diffs)
29 mouse 71206 Katnal2 katanin p60 subunit A-like 2 NM_027721.2 52.6% 53.5% (many diffs)
30 mouse 71206 Katnal2 katanin p60 subunit A-like 2 XR_001782393.1 39.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1464
ORF length:
1398
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga atatgagagt tattattttg taaaatttca gaaatacccc aaaattgtca
121aaaagtcatc agacacagca gaaaataatt taccgcaaag aagtagaggg aagaccagaa
181ggatgatgaa cgacagttgt caaaatcttc ccaagatcaa tcagcagagg ccccggtcca
241aaaccacagc ggggaagaca ggggacacca aatcgctcaa taaggagcat cctaatcagg
301aggtagttga taacactcgc ctggaaaatg ccaacttcgg cctacatata tcaagaatcc
361gtaaagacag tggagaggaa aatgcccacc cacgaagagg ccaaatcatt gacttccaag
421ggctgctcac agatgccatc aagggagcaa ccagtgaact tgccttgaac accttcgacc
481ataatccaga cccctcagaa cgactgctga aacctctgag tgcatttatt ggcatgaaca
541gtgagatgcg agaattggca gccgtggtga gccgggacat ttatctccat aatccaaaca
601taaagtggaa tgacattatt ggacttgatg cagccaagca gttagtcaaa gaagctgttg
661tgtatcctat aaggtatcca cagctattta caggaattct ttctccctgg aaaggactac
721tgctgtacgg ccctccaggt acaggaaaga ctttactggc caaagctgtg gccactgaat
781gtaaaacaac cttctttaac atttctgcat ccaccattgt cagcaaatgg agaggggatt
841cagaaaaact cgttcgggtg ttatttgagc ttgcccgcta ccacgcccca tccacgatct
901tcctggacga gctggagtcg gtgatgagtc agagaggcac agcttctggg ggagaacatg
961aaggaagcct gcggatgaag acagagttac tggtgcagat ggatgggctg gcacgctcag
1021aagatctcgt atttgtctta gcagcttcta acctgccgtg ggagctggac tgtgccatgt
1081tacgccgcct ggagaagagg attctggtcg atctccccag ccgggaggcc aggcaggcca
1141tgatctacca ctggctgcct cctgtgagca agagcagggc cttggagctg cacacagagc
1201tggagtacag tgtgctgagc caggagactg agggctactc aggctcagat attaagctcg
1261tctgcaggga agcagccatg cggcccgtga ggaagatctt tgatgcactt gaaaatcacc
1321agtcagaaag cagcgactta cccaggatcc agttggatat agtaaccact gccgactttc
1381tggatgtgct aactcacacc aagccctccg caaagaatct ggctcagaga tactcagact
1441ggcaaagaga gttcgagtct gtctgcccaa ctttcttgta caaagtggtt ggtaagccta
1501tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1561gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)