Construct: ORF ccsbBroad304_09267

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014752.1_s304c1, BRDN0000461425
Derived from:
ccsbBroadEn_09267
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DIXDC1 (85458)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09267
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85458 DIXDC1 DIX domain containing 1 NM_033425.4 99.8% 99.7% 1274G>T;1314T>A
2 human 85458 DIXDC1 DIX domain containing 1 XM_017018468.1 82.2% 82.2% 0_1ins249;1025G>T;1065T>A
3 human 85458 DIXDC1 DIX domain containing 1 XM_017018469.1 80.8% 80% (many diffs)
4 human 85458 DIXDC1 DIX domain containing 1 XM_024448743.1 72.6% 71.9% (many diffs)
5 human 85458 DIXDC1 DIX domain containing 1 XM_024448742.1 72.5% 71.8% (many diffs)
6 human 85458 DIXDC1 DIX domain containing 1 XM_017018466.2 68.7% 68% (many diffs)
7 human 85458 DIXDC1 DIX domain containing 1 XM_017018467.1 68.7% 68% (many diffs)
8 human 85458 DIXDC1 DIX domain containing 1 NM_001037954.4 68.6% 67.9% (many diffs)
9 mouse 330938 Dixdc1 DIX domain containing 1 XM_006510456.3 88.1% 90.2% (many diffs)
10 mouse 330938 Dixdc1 DIX domain containing 1 XM_017313441.1 83.8% 86.2% (many diffs)
11 mouse 330938 Dixdc1 DIX domain containing 1 XM_006510457.3 72.6% 74.8% (many diffs)
12 mouse 330938 Dixdc1 DIX domain containing 1 XM_006510454.3 60.7% 61.4% (many diffs)
13 mouse 330938 Dixdc1 DIX domain containing 1 NM_001311069.1 58.5% 59.2% (many diffs)
14 mouse 330938 Dixdc1 DIX domain containing 1 XM_006510451.3 58.5% 59.2% (many diffs)
15 mouse 330938 Dixdc1 DIX domain containing 1 XM_017313439.1 58.5% 59.2% (many diffs)
16 mouse 330938 Dixdc1 DIX domain containing 1 XM_017313440.1 58.5% 59.2% (many diffs)
17 mouse 330938 Dixdc1 DIX domain containing 1 NM_178118.2 58.5% 59.2% (many diffs)
18 mouse 330938 Dixdc1 DIX domain containing 1 XM_006510455.3 55.5% 56.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1485
ORF length:
1416
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggagggacg caagtcaaat gcctgacttc acccagtcca atccacagtg
121caaagagcga gtccattata acccagtcag aagagaaggc agattttgtg attattcccg
181ctgaaggaat agagaacaga acagaaggga cagattctcc attatctcga gactggcggc
241cagggagccc tggaacctat ctggagacct catgggaaga acagctgttg gaacaacaag
301aatatttaga aaaagaaatg gaggaagcaa agaaaatgat atcaggacta caggccttac
361tgctcaatgg atccttacct gaagatgaac aggagaggcc cttggccctc tgtgaaccag
421gtgtcaatcc cgaggaacaa ctgattataa tccaaagtcg tctggatcag agtatggagg
481agaatcagga cttaaagaag gaactgctga aatgtaaaca agaagccaga aacttacagg
541ggataaagga tgccttgcag cagagattga ctcagcagga cacatctgtt cttcagctca
601aacaagagct actgagggca aatatggaca aagatgagct gcacaaccag aatgtggatc
661tgcagaggaa gctagatgag aggaaccggc tcttgggaga atataaaaaa gagctggggc
721agaaggatcg ccttcttcag cagcaccagg ccaagttaga agaagcactc cggaaactct
781ctgatgtcag ttaccaccag gtggatctag agcgagagct agaacacaaa gatgtcctct
841tggctcactg tatgaaaaga gaggcagatg aggcgaccaa ctacaacagt cacaactctc
901aaagcaatgg ttttctcctt ccaacggcag gaaaaggagc tacttcagtc agcaacagag
961ggaccagcga cctgcagctt gttcgagatg ctctccgcag cctgcgcaac agcttcagtg
1021gccacgatcc tcagcaccac actattgaca gcttggagca gggcatttct agcctcatgg
1081agcgcctgca tgttatggag acgcagaaga aacaagaaag aaaggttcgg gtcaagtcac
1141ccagaactca agtaggtagt gaataccggg agtcctggcc ccctaactca aagttgcctc
1201actcacagag ctctccaact gtcagcagca cctgtactaa agtgctctat ttcactgacc
1261ggtcacttac gcccttcatg gtcaatatac caaagaggtt ggaggaggtg acgttaaagg
1321attttaaagc agctattgat ctggaaggaa atcaccggta tcacttcaaa gcactggatc
1381cagagtttgg cactgtcaaa gaggagattt tccatgatga tgatgccatc cctggatggg
1441aagggaaaat tgtagcttgg gtggaagaag accatggaga gaatttgcca actttcttgt
1501acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1561gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)