Transcript: Mouse XM_006510454.3

PREDICTED: Mus musculus DIX domain containing 1 (Dixdc1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dixdc1 (330938)
Length:
6445
CDS:
945..3002

Additional Resources:

NCBI RefSeq record:
XM_006510454.3
NBCI Gene record:
Dixdc1 (330938)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006510454.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097257 ACCGGCTCTTAGGAGAATATA pLKO.1 2194 CDS 100% 15.000 21.000 N Dixdc1 n/a
2 TRCN0000097255 CCGAGGAACAGCTGATTATAA pLKO.1 1939 CDS 100% 15.000 21.000 N Dixdc1 n/a
3 TRCN0000097258 GCCTATCTCATCGAGATTGTT pLKO.1 1113 CDS 100% 5.625 7.875 N Dixdc1 n/a
4 TRCN0000097254 CCAGGGAGAATGGTGTTCATT pLKO.1 5058 3UTR 100% 5.625 3.938 N Dixdc1 n/a
5 TRCN0000097256 GCACAGTCAAAGAAGAGGTTT pLKO.1 2905 CDS 100% 4.950 3.465 N Dixdc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006510454.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09267 pDONR223 100% 60.7% 61.4% None (many diffs) n/a
2 ccsbBroad304_09267 pLX_304 0% 60.7% 61.4% V5 (many diffs) n/a
3 TRCN0000480287 CACCAATGGAACCAATAGCGAGGA pLX_317 26.6% 60.7% 61.4% V5 (many diffs) n/a
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