Construct: ORF ccsbBroad304_09724

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016947.1_s304c1, BRDN0000410813
Derived from:
ccsbBroadEn_09724
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSAG1 (158511)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09724
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 158511 CSAG1 chondrosarcoma associated g... NM_001102576.3 100% 100%
2 human 158511 CSAG1 chondrosarcoma associated g... NM_153478.3 100% 100%
3 human 102723547 CSAG2 CSAG family member 2 XM_017030023.1 66.3% 60% (many diffs)
4 human 389903 CSAG3 CSAG family member 3 NM_001129828.3 66% 59% (many diffs)
5 human 102723547 CSAG2 CSAG family member 2 XM_006724857.3 57.5% 51.9% (many diffs)
6 human 389903 CSAG3 CSAG family member 3 NM_001129826.3 57.2% 51.1% (many diffs)
7 human 389903 CSAG3 CSAG family member 3 XM_024452379.1 57.2% 51.1% (many diffs)
8 human 100130935 CSAG4 CSAG family member 4 (pseud... NR_073432.1 28.4% (many diffs)
9 human 102723547 CSAG2 CSAG family member 2 XR_938529.2 28.1% (many diffs)
10 human 389903 CSAG3 CSAG family member 3 NR_130638.1 27.1% (many diffs)
11 human 102723547 CSAG2 CSAG family member 2 XR_938528.2 17.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
300
ORF length:
234
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc ggcgactaca gcctgctggc ctgccttcac tgtcctgggg gaagctcggg
121gagaccaggt ggactggagt agactgtaca gagacactgg tctggtgaag atgtccagga
181aaccacgagc ctccagccca ttttccaaca accacccatc aacaccaaag aggttcccaa
241gacaacccag aagggaaaag ggacccgtca aggaagttcc aggaacaaaa ggctctccct
301acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
361attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
421ggatta

Download FASTA (ORF) (Full)