Transcript: Mouse XM_006532625.3

PREDICTED: Mus musculus nuclear receptor co-repressor 1 (Ncor1), transcript variant X34, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ncor1 (20185)
Length:
8410
CDS:
251..7570

Additional Resources:

NCBI RefSeq record:
XM_006532625.3
NBCI Gene record:
Ncor1 (20185)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532625.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350169 ATGGACAGGATCACGTATATT pLKO_005 5249 CDS 100% 15.000 21.000 N Ncor1 n/a
2 TRCN0000096477 CCAATAATTGAGGGTTCCATT pLKO.1 4364 CDS 100% 4.950 6.930 N Ncor1 n/a
3 TRCN0000096474 CCTCTAATACAGGCACTTCAA pLKO.1 7757 3UTR 100% 4.950 6.930 N Ncor1 n/a
4 TRCN0000317939 CCTCTAATACAGGCACTTCAA pLKO_005 7757 3UTR 100% 4.950 6.930 N Ncor1 n/a
5 TRCN0000310755 GTGATCATCACCCGGCAAATT pLKO_005 6059 CDS 100% 13.200 10.560 N NCOR1 n/a
6 TRCN0000314177 GTGATCATCACCCGGCAAATT pLKO_005 6059 CDS 100% 13.200 10.560 N Ncor1 n/a
7 TRCN0000096476 CGGCATAATCTTGACAACCTT pLKO.1 2264 CDS 100% 3.000 2.400 N Ncor1 n/a
8 TRCN0000318009 CGGCATAATCTTGACAACCTT pLKO_005 2264 CDS 100% 3.000 2.400 N Ncor1 n/a
9 TRCN0000350110 AGCGCTGCAGGAGAGGTTTAT pLKO_005 4886 CDS 100% 13.200 9.240 N Ncor1 n/a
10 TRCN0000096478 CCAGACATGGTTAAGGCAAAT pLKO.1 6236 CDS 100% 10.800 7.560 N Ncor1 n/a
11 TRCN0000096475 CCCAGCTACAAGAGGAATCAT pLKO.1 5164 CDS 100% 5.625 3.938 N Ncor1 n/a
12 TRCN0000060657 GCTCTCAAAGTTCAGACTCTT pLKO.1 6108 CDS 100% 4.950 3.465 N NCOR1 n/a
13 TRCN0000299677 GCTCTCAAAGTTCAGACTCTT pLKO_005 6108 CDS 100% 4.950 3.465 N NCOR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532625.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10302 pDONR223 100% 3.7% 3.5% None (many diffs) n/a
2 ccsbBroad304_10302 pLX_304 0% 3.7% 3.5% V5 (many diffs) n/a
3 TRCN0000466119 TTAAAGCTTTTAAGCAAGACCAGA pLX_317 100% 3.7% 3.5% V5 (many diffs) n/a
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