Construct: ORF ccsbBroad304_10507

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009514.1_s304c1, BRDN0000406526
Derived from:
ccsbBroadEn_10507
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX7 (51375)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10507
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51375 SNX7 sorting nexin 7 XM_017001428.1 99.9% 100% 951G>A
2 human 51375 SNX7 sorting nexin 7 NM_001364903.1 86.7% 86.8% 933_1085del;1104G>A
3 human 51375 SNX7 sorting nexin 7 XM_011541564.3 86.7% 86.8% 933_1085del;1104G>A
4 human 51375 SNX7 sorting nexin 7 XM_017001425.2 86.7% 86.8% 933_1085del;1104G>A
5 human 51375 SNX7 sorting nexin 7 XM_017001426.2 86.7% 86.8% 933_1085del;1104G>A
6 human 51375 SNX7 sorting nexin 7 XM_017001427.2 86.7% 86.8% 933_1085del;1104G>A
7 human 51375 SNX7 sorting nexin 7 XM_006710677.2 79.5% 79.6% 1_258del;1209G>A
8 human 51375 SNX7 sorting nexin 7 NM_015976.5 74.4% 74.5% 1_192del;1125_1277del;1296G>A
9 human 51375 SNX7 sorting nexin 7 NM_152238.4 62.2% 62.3% (many diffs)
10 human 51375 SNX7 sorting nexin 7 NR_033716.2 59.1% 1_323del;1274G>A;1332_1703del
11 mouse 76561 Snx7 sorting nexin 7 NM_001190156.1 72.9% 78.9% (many diffs)
12 mouse 76561 Snx7 sorting nexin 7 NM_029655.3 64.7% 69.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1074
ORF length:
1008
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga catgaactcc ttcagcccta tgatgccaac atccccttta tcaatgataa
121accaaatcaa gtttgaggat gaaccagatt taaaggatct cttcatcaca gttgatgaac
181ctgaaagtca tgttactaca atagaaactt tcattacgta taggattatt actaagacat
241ctcgtgggga atttgactcc agtgaatttg aagttaggag acgatatcaa gatttccttt
301ggttgaaggg aaaactggaa gaagcacacc ccactctgat tattccacca ttgccagaaa
361agtttatagt aaaaggaatg gtggaacgct ttaacgatga cttcattgag acacgcagga
421aggctttaca taaatttttg aaccgaattg ctgatcatcc aactttaaca tttaatgaag
481acttcaaaat ttttctcact gcacaagctt gggaactctc ttctcacaag aagcaaggtc
541ctggcttgct aagcaggatg gggcaaaccg tcagagctgt tgcgtcctca atgagaggag
601ttaaaaaccg cccagaggag ttcatggaaa tgaataactt tattgaacta tttagccaga
661aaataaattt gatagataaa atatctcaga gaatttataa ggaagaaagg gaatattttg
721atgaaatgaa agaatatggc ccaattcata ttctgtggtc agcgtcagaa gaggatctgg
781ttgatactct aaaggatgtt gccagctgca ttgacagatg ctgtaaggcc actgaaaagc
841ggatgtctgg actctcagag gccctgcttc ctgttgtaca tgagtacgtg ctttatagtg
901aaatgttaat gggtgttatg aaaagaagag accaaataca agcagaactg gattccaaag
961ttgaagtttt gacctataaa aaggcagata ctgatctgtg ccttgctacg tgggaatcat
1021tccttacatc acagaccaac cttcacttgg aagaagcctc tgaagataaa ccttacccaa
1081ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1141cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)