Construct: ORF ccsbBroad304_10576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009012.1_s304c1, BRDN0000410962
- Derived from:
- ccsbBroadEn_10576
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OSTCP1 (202459)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10576
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_021227.4 | 75.3% | 73.1% | (many diffs) |
| 2 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_001267818.2 | 64.6% | 61.4% | (many diffs) |
| 3 | human | 58505 | OSTC | oligosaccharyltransferase c... | NM_001267817.1 | 31.6% | 29.5% | (many diffs) |
| 4 | human | 202459 | OSTCP1 | oligosaccharyltransferase c... | NR_028496.1 | 29.7% | 1_231del;370T>A;589_1195del | |
| 5 | mouse | 66357 | Ostc | oligosaccharyltransferase c... | NM_025509.3 | 68.2% | 73.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat tgtgtatgct ctgatggtgg tgtcttactt cctcgtcact ggaggaataa 121 tttatgatgt tattgttgaa cctccaagca ttggctctat gactgatgaa cacgggcatc 181 agaggccagt agctttcttg gccaacagag taaatgaaca atgtattatg gaaggacttg 241 catccagctt cctgtttaca ataggaggtt taggtttcat attcctggac cgatggaatg 301 caccaaatat cccaaaactc aatagatttc ttcttctatt cattggattc gtttgtgtcc 361 tattgagctt tttcatggct agagtattca tgagaatgaa actgccgggc tatctgatgg 421 gttacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 481 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 541 tctggatta