Construct: ORF ccsbBroad304_11036

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008783.1_s304c1, BRDN0000412077
Derived from:
ccsbBroadEn_11036
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLXNB1 (5364)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11036
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5364 PLXNB1 plexin B1 NM_001130082.3 3.8% 3.6% (many diffs)
2 human 5364 PLXNB1 plexin B1 NM_002673.5 3.8% 3.6% (many diffs)
3 human 5364 PLXNB1 plexin B1 XM_017006631.1 3.8% 3.6% (many diffs)
4 human 5364 PLXNB1 plexin B1 XM_011533833.2 3.8% 3.6% (many diffs)
5 human 5364 PLXNB1 plexin B1 XM_011533834.1 3.8% 3.6% (many diffs)
6 human 5364 PLXNB1 plexin B1 XM_011533835.1 3.8% 3.6% (many diffs)
7 human 5364 PLXNB1 plexin B1 XM_011533836.1 3.8% 3.6% (many diffs)
8 human 5364 PLXNB1 plexin B1 XM_011533837.2 3.8% 3.6% (many diffs)
9 human 5364 PLXNB1 plexin B1 XM_017006630.1 3.8% 3.6% (many diffs)
10 human 5364 PLXNB1 plexin B1 XM_024453600.1 3.8% 3.6% (many diffs)
11 human 5364 PLXNB1 plexin B1 XR_940458.2 2.7% (many diffs)
12 human 5364 PLXNB1 plexin B1 XR_001740177.2 2.2% (many diffs)
13 human 5364 PLXNB1 plexin B1 XR_940457.2 2.2% (many diffs)
14 mouse 235611 Plxnb1 plexin B1 XM_006512081.1 5.7% 5.5% (many diffs)
15 mouse 235611 Plxnb1 plexin B1 NM_172775.2 3.5% 3.3% (many diffs)
16 mouse 235611 Plxnb1 plexin B1 XM_006512075.3 3.5% 3.3% (many diffs)
17 mouse 235611 Plxnb1 plexin B1 XM_006512076.3 3.5% 3.3% (many diffs)
18 mouse 235611 Plxnb1 plexin B1 XM_006512077.3 3.5% 3.3% (many diffs)
19 mouse 235611 Plxnb1 plexin B1 XM_006512078.2 3.5% 3.3% (many diffs)
20 mouse 235611 Plxnb1 plexin B1 XM_006512079.3 3.5% 3.3% (many diffs)
21 mouse 235611 Plxnb1 plexin B1 XM_006512080.2 3.5% 3.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
321
ORF length:
252
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gccattccgg cacaagcctg ggagtgtgtt ctccgtggag ggggagaacc
121tggaccttgc aatgtccaag gaggaggtgg tggctatgat aggggatggc ccctgtgtgg
181tgaagacgct gacgcggcac cacctgtact gcgagccccc cgtggagcag cccctgccac
241ggcaccatgc cctccgagag gcacctgact ctttgcctga gttcacggtc agtgggcagg
301tccctggccg ggctgggcat ttgccaactt tcttgtacaa agtggttggt aagcctatcc
361ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
421ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)