Construct: ORF ccsbBroadEn_11036
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008783.1_s300c1, BRDN0000398533
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLXNB1 (5364)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5364 | PLXNB1 | plexin B1 | NM_001130082.3 | 3.8% | 3.6% | (many diffs) |
| 2 | human | 5364 | PLXNB1 | plexin B1 | NM_002673.5 | 3.8% | 3.6% | (many diffs) |
| 3 | human | 5364 | PLXNB1 | plexin B1 | XM_017006631.1 | 3.8% | 3.6% | (many diffs) |
| 4 | human | 5364 | PLXNB1 | plexin B1 | XM_011533833.2 | 3.8% | 3.6% | (many diffs) |
| 5 | human | 5364 | PLXNB1 | plexin B1 | XM_011533834.1 | 3.8% | 3.6% | (many diffs) |
| 6 | human | 5364 | PLXNB1 | plexin B1 | XM_011533835.1 | 3.8% | 3.6% | (many diffs) |
| 7 | human | 5364 | PLXNB1 | plexin B1 | XM_011533836.1 | 3.8% | 3.6% | (many diffs) |
| 8 | human | 5364 | PLXNB1 | plexin B1 | XM_011533837.2 | 3.8% | 3.6% | (many diffs) |
| 9 | human | 5364 | PLXNB1 | plexin B1 | XM_017006630.1 | 3.8% | 3.6% | (many diffs) |
| 10 | human | 5364 | PLXNB1 | plexin B1 | XM_024453600.1 | 3.8% | 3.6% | (many diffs) |
| 11 | human | 5364 | PLXNB1 | plexin B1 | XR_940458.2 | 2.7% | (many diffs) | |
| 12 | human | 5364 | PLXNB1 | plexin B1 | XR_001740177.2 | 2.2% | (many diffs) | |
| 13 | human | 5364 | PLXNB1 | plexin B1 | XR_940457.2 | 2.2% | (many diffs) | |
| 14 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512081.1 | 5.7% | 5.5% | (many diffs) |
| 15 | mouse | 235611 | Plxnb1 | plexin B1 | NM_172775.2 | 3.5% | 3.3% | (many diffs) |
| 16 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512075.3 | 3.5% | 3.3% | (many diffs) |
| 17 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512076.3 | 3.5% | 3.3% | (many diffs) |
| 18 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512077.3 | 3.5% | 3.3% | (many diffs) |
| 19 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512078.2 | 3.5% | 3.3% | (many diffs) |
| 20 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512079.3 | 3.5% | 3.3% | (many diffs) |
| 21 | mouse | 235611 | Plxnb1 | plexin B1 | XM_006512080.2 | 3.5% | 3.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 321
- ORF length:
- 252
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCATTCCGG CACAAGCCTG GGAGTGTGTT CTCCGTGGAG GGGGAGAACC 121 TGGACCTTGC AATGTCCAAG GAGGAGGTGG TGGCTATGAT AGGGGATGGC CCCTGTGTGG 181 TGAAGACGCT GACGCGGCAC CACCTGTACT GCGAGCCCCC CGTGGAGCAG CCCCTGCCAC 241 GGCACCATGC CCTCCGAGAG GCACCTGACT CTTTGCCTGA GTTCACGGTC AGTGGGCAGG 301 TCCCTGGCCG GGCTGGGCAT TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 361 attgcttatc aatttgttgc aacgaac