Construct: ORF ccsbBroad304_11087

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005714.1_s304c1, BRDN0000409687
Derived from:
ccsbBroadEn_11087
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAD51C (5889)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11087
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5889 RAD51C RAD51 paralog C NM_002876.3 99.2% 99.2% 403_405delTGG
2 human 5889 RAD51C RAD51 paralog C NR_103873.1 44.8% 1_71del;112_113ins103;371_563del
3 human 5889 RAD51C RAD51 paralog C XM_006722002.4 39.1% 39.1% 403_1026del
4 human 5889 RAD51C RAD51 paralog C NM_058216.3 35.6% 35.6% 403_1128del
5 human 5889 RAD51C RAD51 paralog C XM_006722001.4 35.5% 35.5% 403_1131del
6 human 5889 RAD51C RAD51 paralog C XR_934514.3 23.1% 1_504del;907_1738del
7 human 5889 RAD51C RAD51 paralog C XR_934513.3 21.2% 1_504del;907_1889del
8 human 5889 RAD51C RAD51 paralog C NR_103872.2 16.7% 1_42del;445_2395del
9 mouse 114714 Rad51c RAD51 paralog C XM_011248671.2 43.7% 41.9% (many diffs)
10 mouse 114714 Rad51c RAD51 paralog C NM_053269.3 29.7% 28.5% (many diffs)
11 mouse 114714 Rad51c RAD51 paralog C XM_006532009.3 28.7% 26.4% (many diffs)
12 mouse 114714 Rad51c RAD51 paralog C XR_388326.3 16.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
468
ORF length:
402
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg cgggaagacg ttccgctttg aaatgcagcg ggatttggtg agtttcccgc
121tgtctccagc ggtgcgggtg aagctggtgt ctgcggggtt ccagactgct gaggaactcc
181tagaggtgaa accctccgag cttagcaaag aagttgggat atctaaagca gaagccttag
241aaactctgca aattatcaga agagaatgtc tcacaaataa accaagatat gctggtacat
301ctgagtcaca caagaagtgt acagcactgg aacttcttga gcaggagcat acccagggct
361tcataatcac cttctgttca gcactagatg atattcttgg gggtggagtg cccttaatga
421aaacaacaga aatttgtggt gcaccaggtg ttggaaaaac acaattatgc ccaactttct
481tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
541aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)