Construct: ORF ccsbBroad304_11502

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017527.1_s304c1, BRDN0000411510
Derived from:
ccsbBroadEn_11502
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BAIAP2 (10458)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11502
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10458 BAIAP2 BAR/IMD domain containing a... NM_006340.3 98.3% 98.2% 1536_1560delinsG
2 human 10458 BAIAP2 BAR/IMD domain containing a... NM_017450.3 98.2% 98% 1536_1563delinsG
3 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256948.3 98% 97.8% 1067_1069delCAG;1539_1566delinsG
4 human 10458 BAIAP2 BAR/IMD domain containing a... NM_001144888.2 95.8% 95.8% 1537_1602del
5 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721637.2 95.7% 95.7% 1067_1069delCAG;1540_1605del
6 human 10458 BAIAP2 BAR/IMD domain containing a... NM_017451.3 92.7% 92.7% 1537_1656del
7 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256945.1 92.5% 92.4% 54_152del;1635_1659delinsG
8 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256944.1 92.3% 92.2% 54_152del;1635_1662delinsG
9 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721636.1 92.3% 92.2% 54_152del;1166_1168delCAG;1638_1662delinsG
10 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524193.1 92.3% 92.2% 54_152del;1166_1168delCAG;1638_1662delinsG
11 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721635.1 92.1% 92% 54_152del;1166_1168delCAG;1638_1665delinsG
12 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256943.1 90.2% 90.2% 54_152del;1636_1701del
13 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024017.1 90.2% 84.2% (many diffs)
14 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524194.1 90.1% 90.1% 54_152del;1166_1168delCAG;1639_1704del
15 human 10458 BAIAP2 BAR/IMD domain containing a... XM_024450534.1 83.1% 77.3% (many diffs)
16 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024018.1 81.1% 81.1% 0_1ins234;833_835delCAG;1306_1371del
17 human 10458 BAIAP2 BAR/IMD domain containing a... XM_024450535.1 81.1% 81.1% 0_1ins234;833_835delCAG;1306_1371del
18 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524197.1 50.3% 50.3% 0_1ins729;808_873del
19 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524195.1 50.2% 50.2% 0_1ins729;338_340delCAG;811_876del
20 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524196.1 50.2% 50.2% 0_1ins729;338_340delCAG;811_876del
21 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024019.1 50.2% 50.2% 0_1ins729;338_340delCAG;811_876del
22 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531966.3 86.3% 94.2% (many diffs)
23 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531967.3 86.3% 94.2% (many diffs)
24 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531968.3 86.3% 94.2% (many diffs)
25 mouse 108100 Baiap2 brain-specific angiogenesis... NM_130862.4 86.1% 94% (many diffs)
26 mouse 108100 Baiap2 brain-specific angiogenesis... NM_001037755.3 84.1% 91.9% (many diffs)
27 mouse 108100 Baiap2 brain-specific angiogenesis... NM_001037754.3 79.4% 87.5% (many diffs)
28 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531969.3 77.5% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1602
ORF length:
1536
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tctgtctcgc tcagaggaga tgcaccggct cacggaaaat gtctataaga
121ccatcatgga gcagttcaac cctagcctcc ggaacttcat cgccatgggg aagaattacg
181agaaggcact ggcaggtgtg acgtatgcag ccaaaggcta ctttgacgcc ctggtgaaga
241tgggggagct ggccagcgag agccagggct ccaaagaact cggagacgtt ctcttccaga
301tggctgaagt ccacaggcag atccagaatc agctggaaga aatgctgaag tcttttcaca
361acgagctgct tacgcagctg gagcagaagg tggagctgga ctccaggtat ctgagtgctg
421cgctgaagaa ataccagact gagcaaagga gcaaaggcga cgccctggac aagtgtcagg
481ctgagctgaa gaagcttcgg aagaagagcc agggcagcaa gaatcctcag aagtactcgg
541acaaggagct gcagtacatc gacgccatca gcaacaagca gggcgagctg gagaattacg
601tgtccgacgg ctacaagacc gcactgacag aggagcgcag gcgcttctgc ttcctggtgg
661agaagcagtg cgccgtggcc aagaactccg cggcctacca ctccaagggc aaggagctgc
721tggcgcagaa gctgccgctg tggcaacagg cctgtgccga ccccagcaag atcccggagc
781gcgcggtgca gctcatgcag caggtggcca gcaacggcgc caccctcccc agcgccctgt
841cggcctccaa gtccaacctg gtcatttccg accccattcc gggggccaag cccctgccgg
901tgccccccga gctggcaccg ttcgtggggc ggatgtctgc ccaggagagc acacccatca
961tgaacggcgt cacaggcccg gatggcgagg actacagccc gtgggctgac cgcaaggctg
1021cccagcccaa atccctgtct cctccgcagt ctcagagcaa gctcagcgac tcctactcca
1081acacactccc cgtgcgcaag agcgtgaccc caaaaaacag ctatgccacc accgagaaca
1141agactctgcc tcgctcgagc tccatggcag ccggcctgga gcgcaatggc cgtatgcggg
1201tgaaggccat cttctcccac gctgctgggg acaacagcac cctcctgagc ttcaaggagg
1261gtgacctcat taccctgctg gtgcctgagg cccgcgatgg ctggcactac ggagagagtg
1321agaagaccaa gatgcggggc tggtttccct tctcctacac ccgggtcttg gacagcgatg
1381gcagtgacag gctgcacatg agcctgcagc aagggaagag cagcagcacg ggcaacctcc
1441tggacaagga cgacctggcc atcccacccc ccgattacgg cgccgcctcc cgggccttcc
1501ccgcccagac ggccagcggc ttcaagcaga ggccctacag tgtggccgtg cccgccttct
1561cccagggcct ggatgactat ggagcgcggt ccatgagcag gtacccaact ttcttgtaca
1621aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1681ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)