Construct: ORF ccsbBroadEn_11502
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017527.1_s300c1, BRDN0000397956
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BAIAP2 (10458)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | NM_006340.3 | 98.3% | 98.2% | 1536_1560delinsG |
| 2 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | NM_017450.3 | 98.2% | 98% | 1536_1563delinsG |
| 3 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_005256948.3 | 98% | 97.8% | 1067_1069delCAG;1539_1566delinsG |
| 4 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | NM_001144888.2 | 95.8% | 95.8% | 1537_1602del |
| 5 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_006721637.2 | 95.7% | 95.7% | 1067_1069delCAG;1540_1605del |
| 6 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | NM_017451.3 | 92.7% | 92.7% | 1537_1656del |
| 7 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_005256945.1 | 92.5% | 92.4% | 54_152del;1635_1659delinsG |
| 8 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_005256944.1 | 92.3% | 92.2% | 54_152del;1635_1662delinsG |
| 9 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_006721636.1 | 92.3% | 92.2% | 54_152del;1166_1168delCAG;1638_1662delinsG |
| 10 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_011524193.1 | 92.3% | 92.2% | 54_152del;1166_1168delCAG;1638_1662delinsG |
| 11 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_006721635.1 | 92.1% | 92% | 54_152del;1166_1168delCAG;1638_1665delinsG |
| 12 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_005256943.1 | 90.2% | 90.2% | 54_152del;1636_1701del |
| 13 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_017024017.1 | 90.2% | 84.2% | (many diffs) |
| 14 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_011524194.1 | 90.1% | 90.1% | 54_152del;1166_1168delCAG;1639_1704del |
| 15 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_024450534.1 | 83.1% | 77.3% | (many diffs) |
| 16 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_017024018.1 | 81.1% | 81.1% | 0_1ins234;833_835delCAG;1306_1371del |
| 17 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_024450535.1 | 81.1% | 81.1% | 0_1ins234;833_835delCAG;1306_1371del |
| 18 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_011524197.1 | 50.3% | 50.3% | 0_1ins729;808_873del |
| 19 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_011524195.1 | 50.2% | 50.2% | 0_1ins729;338_340delCAG;811_876del |
| 20 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_011524196.1 | 50.2% | 50.2% | 0_1ins729;338_340delCAG;811_876del |
| 21 | human | 10458 | BAIAP2 | BAR/IMD domain containing a... | XM_017024019.1 | 50.2% | 50.2% | 0_1ins729;338_340delCAG;811_876del |
| 22 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | XM_006531966.3 | 86.3% | 94.2% | (many diffs) |
| 23 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | XM_006531967.3 | 86.3% | 94.2% | (many diffs) |
| 24 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | XM_006531968.3 | 86.3% | 94.2% | (many diffs) |
| 25 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | NM_130862.4 | 86.1% | 94% | (many diffs) |
| 26 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | NM_001037755.3 | 84.1% | 91.9% | (many diffs) |
| 27 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | NM_001037754.3 | 79.4% | 87.5% | (many diffs) |
| 28 | mouse | 108100 | Baiap2 | brain-specific angiogenesis... | XM_006531969.3 | 77.5% | 85.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1602
- ORF length:
- 1536
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TCTGTCTCGC TCAGAGGAGA TGCACCGGCT CACGGAAAAT GTCTATAAGA 121 CCATCATGGA GCAGTTCAAC CCTAGCCTCC GGAACTTCAT CGCCATGGGG AAGAATTACG 181 AGAAGGCACT GGCAGGTGTG ACGTATGCAG CCAAAGGCTA CTTTGACGCC CTGGTGAAGA 241 TGGGGGAGCT GGCCAGCGAG AGCCAGGGCT CCAAAGAACT CGGAGACGTT CTCTTCCAGA 301 TGGCTGAAGT CCACAGGCAG ATCCAGAATC AGCTGGAAGA AATGCTGAAG TCTTTTCACA 361 ACGAGCTGCT TACGCAGCTG GAGCAGAAGG TGGAGCTGGA CTCCAGGTAT CTGAGTGCTG 421 CGCTGAAGAA ATACCAGACT GAGCAAAGGA GCAAAGGCGA CGCCCTGGAC AAGTGTCAGG 481 CTGAGCTGAA GAAGCTTCGG AAGAAGAGCC AGGGCAGCAA GAATCCTCAG AAGTACTCGG 541 ACAAGGAGCT GCAGTACATC GACGCCATCA GCAACAAGCA GGGCGAGCTG GAGAATTACG 601 TGTCCGACGG CTACAAGACC GCACTGACAG AGGAGCGCAG GCGCTTCTGC TTCCTGGTGG 661 AGAAGCAGTG CGCCGTGGCC AAGAACTCCG CGGCCTACCA CTCCAAGGGC AAGGAGCTGC 721 TGGCGCAGAA GCTGCCGCTG TGGCAACAGG CCTGTGCCGA CCCCAGCAAG ATCCCGGAGC 781 GCGCGGTGCA GCTCATGCAG CAGGTGGCCA GCAACGGCGC CACCCTCCCC AGCGCCCTGT 841 CGGCCTCCAA GTCCAACCTG GTCATTTCCG ACCCCATTCC GGGGGCCAAG CCCCTGCCGG 901 TGCCCCCCGA GCTGGCACCG TTCGTGGGGC GGATGTCTGC CCAGGAGAGC ACACCCATCA 961 TGAACGGCGT CACAGGCCCG GATGGCGAGG ACTACAGCCC GTGGGCTGAC CGCAAGGCTG 1021 CCCAGCCCAA ATCCCTGTCT CCTCCGCAGT CTCAGAGCAA GCTCAGCGAC TCCTACTCCA 1081 ACACACTCCC CGTGCGCAAG AGCGTGACCC CAAAAAACAG CTATGCCACC ACCGAGAACA 1141 AGACTCTGCC TCGCTCGAGC TCCATGGCAG CCGGCCTGGA GCGCAATGGC CGTATGCGGG 1201 TGAAGGCCAT CTTCTCCCAC GCTGCTGGGG ACAACAGCAC CCTCCTGAGC TTCAAGGAGG 1261 GTGACCTCAT TACCCTGCTG GTGCCTGAGG CCCGCGATGG CTGGCACTAC GGAGAGAGTG 1321 AGAAGACCAA GATGCGGGGC TGGTTTCCCT TCTCCTACAC CCGGGTCTTG GACAGCGATG 1381 GCAGTGACAG GCTGCACATG AGCCTGCAGC AAGGGAAGAG CAGCAGCACG GGCAACCTCC 1441 TGGACAAGGA CGACCTGGCC ATCCCACCCC CCGATTACGG CGCCGCCTCC CGGGCCTTCC 1501 CCGCCCAGAC GGCCAGCGGC TTCAAGCAGA GGCCCTACAG TGTGGCCGTG CCCGCCTTCT 1561 CCCAGGGCCT GGATGACTAT GGAGCGCGGT CCATGAGCAG GTACCCAACT TTCTTGTACA 1621 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac