Transcript: Mouse XM_006531966.3

PREDICTED: Mus musculus brain-specific angiogenesis inhibitor 1-associated protein 2 (Baiap2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Baiap2 (108100)
Length:
5710
CDS:
428..1993

Additional Resources:

NCBI RefSeq record:
XM_006531966.3
NBCI Gene record:
Baiap2 (108100)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531966.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079057 CTATTTCGATGCTCTGGTAAA pLKO.1 580 CDS 100% 10.800 15.120 N Baiap2 n/a
2 TRCN0000306254 GCAGCTGGCCTAGAACGTAAT pLKO_005 1532 CDS 100% 10.800 15.120 N Baiap2 n/a
3 TRCN0000079055 GCTATTTCGATGCTCTGGTAA pLKO.1 579 CDS 100% 4.950 6.930 N Baiap2 n/a
4 TRCN0000311498 CATCGATGCCATCAGCAATAA pLKO_005 919 CDS 100% 13.200 10.560 N Baiap2 n/a
5 TRCN0000079054 CGGAAGTGACAGATTGCATAT pLKO.1 1744 CDS 100% 10.800 7.560 N Baiap2 n/a
6 TRCN0000326479 CGGAAGTGACAGATTGCATAT pLKO_005 1744 CDS 100% 10.800 7.560 N Baiap2 n/a
7 TRCN0000306312 TGATGCAACAGATGGCCAATA pLKO_005 1155 CDS 100% 10.800 7.560 N Baiap2 n/a
8 TRCN0000079056 CTGAAGAAATACCAAACGGAA pLKO.1 785 CDS 100% 2.640 1.848 N Baiap2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531966.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11502 pDONR223 100% 86.3% 94.2% None (many diffs) n/a
2 ccsbBroad304_11502 pLX_304 0% 86.3% 94.2% V5 (many diffs) n/a
3 ccsbBroadEn_11501 pDONR223 100% 86.2% 94% None (many diffs) n/a
4 ccsbBroad304_11501 pLX_304 0% 86.2% 94% V5 (many diffs) n/a
5 TRCN0000465559 AACGTCTACCTACTGGCACAAAAC pLX_317 21.4% 86.2% 94% V5 (many diffs) n/a
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