Construct: ORF ccsbBroad304_11640
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002878.1_s304c1, BRDN0000401930
- Derived from:
- ccsbBroadEn_11640
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC8 (22878)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11640
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025615.1 | 97.9% | 97.8% | 1_87del;335T>C |
| 2 | human | 22878 | TRAPPC8 | trafficking protein particl... | NM_014939.4 | 96.2% | 96.2% | 1_162del |
| 3 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258233.3 | 96.1% | 96.1% | 1_162del;410T>C;864_866delAGT |
| 4 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025616.2 | 94.1% | 94% | 1_162del;410T>C;3980_3981ins90 |
| 5 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258234.3 | 94% | 94% | (many diffs) |
| 6 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_006722420.4 | 89.2% | 88.5% | (many diffs) |
| 7 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_017025617.2 | 86.3% | 85.1% | (many diffs) |
| 8 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_011525884.3 | 86.2% | 85.1% | (many diffs) |
| 9 | human | 22878 | TRAPPC8 | trafficking protein particl... | XM_005258235.3 | 83.8% | 82.5% | (many diffs) |
| 10 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753169.2 | 75.2% | (many diffs) | |
| 11 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753168.2 | 75.2% | (many diffs) | |
| 12 | human | 22878 | TRAPPC8 | trafficking protein particl... | XR_001753167.2 | 75.1% | (many diffs) | |
| 13 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_006526333.3 | 85.2% | 88.1% | (many diffs) |
| 14 | mouse | 75964 | Trappc8 | trafficking protein particl... | NM_177038.3 | 85.1% | 88% | (many diffs) |
| 15 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247030.2 | 84.7% | 87.6% | (many diffs) |
| 16 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247029.2 | 84.6% | 87.4% | (many diffs) |
| 17 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318013.1 | 84.4% | 87.3% | (many diffs) |
| 18 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247028.2 | 84.3% | 87.1% | (many diffs) |
| 19 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318012.1 | 84.3% | 87.1% | (many diffs) |
| 20 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_017318011.1 | 84.2% | 87% | (many diffs) |
| 21 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247031.2 | 83.5% | 86.3% | (many diffs) |
| 22 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247032.2 | 83.1% | 85.9% | (many diffs) |
| 23 | mouse | 75964 | Trappc8 | trafficking protein particl... | XM_011247033.2 | 82.2% | 85.2% | (many diffs) |
| 24 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782398.1 | 66.4% | (many diffs) | |
| 25 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782396.1 | 66.2% | (many diffs) | |
| 26 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782399.1 | 66% | (many diffs) | |
| 27 | mouse | 75964 | Trappc8 | trafficking protein particl... | XR_001782397.1 | 65.8% | (many diffs) | |
| 28 | mouse | 75964 | Trappc8 | trafficking protein particl... | NM_029491.2 | 47.9% | 47.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4212
- ORF length:
- 4143
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gagagatcct aataatcaac ttcacgtaat taaaaatttg aagatagcag 121 taagcaacat tgtcacccag ccacctcagc ctggagccat ccggaagctt ttgaatgatg 181 ttgtttctgg cagtcagcct gcagaaggat tagtagctaa tgtgattaca gcaggagatt 241 atgaccttaa catcagtgcc actactccat ggtttgagtc ttacagagaa acctttcttc 301 agtcgatgcc agcatcggat catgaatttc tgaaccacta tttagcatgt atgttggtag 361 cgtcatctag tgaagctgaa cctgtggaac agttttcaaa gttgtcacaa gaacagcatc 421 gaattcagca caacagtgat tattcctacc ccaagtggtt tataccaaat acacttaaat 481 actatgtact tttacatgat gtaagtgcag gagatgaaca gagagctgaa tcaatttatg 541 aagaaatgaa acagaaatat ggaactcagg gttgctattt acttaaaatt aattctcgaa 601 catctaatcg agcatcagat gaacagatac cagatccttg gagtcagtat ctccagaaaa 661 atagtattca aaaccaggaa tcatatgaag atggcccttg tactataact tcaaataaga 721 attctgataa taacttgctt tcattggatg gattagataa cgaagtcaaa gatggcttac 781 caaataactt tagagctcac ccacttcagt tggagcaatc cagtgaccct tctaacagta 841 ttgatggccc agatcatcta agatctgctt catcgttaca tgaaacaaag aaaggaaata 901 ctggaataat tcatggtgca tgtttaacac ttactgatca tgatagaatt cgacagttta 961 tacaagagtt cacatttcgg ggccttttgc cacatataga gaaaacaatt aggcaattaa 1021 acgatcagct aatatcaaga aaaggtttga gtcgatctct attttctgca actaaaaaat 1081 ggtttagtgg cagtaaagtt ccagaaaaga gcattaatga cctgaaaaat acatctggct 1141 tgctgtatcc gccggaagca ccagaacttc aaatcaggaa aatggctgac ttatgttttt 1201 tggtgcagca ttatgatttg gcttacagtt gctatcatac tgcaaagaaa gattttctta 1261 atgatcaagc aatgctttat gcagctggtg ccttggaaat ggcagcagtg tctgcttttc 1321 ttcaaccagg agcacctagg ccatatcctg ctcattacat ggatacagca attcagacat 1381 acagagatat ctgcaagaat atggtgttgg ctgaaagatg tgtgttgctt agtgctgaac 1441 ttttaaaaag ccaaagcaaa tattcagagg ctgcagctct cctaatacgg ttgaccagtg 1501 aggattctga tcttcgaagt gcacttcttt tggaacaggc agcacattgc tttataaaca 1561 tgaaaagtcc catggttaga aaatatgcat ttcatatgat attggcaggc catcgattta 1621 gtaaagcagg gcagaaaaag catgctttac gctgttattg tcaagccatg caagtttaca 1681 aaggaaaagg ctggtctctt gcagaggatc acattaattt cactattggg cgccagtcct 1741 atactcttag acagctggat aatgctgtgt ctgcttttag gcatattcta attaatgaaa 1801 gtaaacaatc tgctgctcaa cagggggctt tcctcagaga atatctttat gtttacaaga 1861 atgtaagtca gctgtcacca gatggtcctt tgccacagct tcctttaccg tatattaaca 1921 gttcagcaac acgggttttt tttggccatg acagacgacc agcggatggt gaaaaacaag 1981 cagctactca tgtaagtctt gatcaagaat atgattctga atcctctcag cagtggcgag 2041 aacttgagga acaagttgtt tctgtggtta acaaaggagt aattccatcc aattttcatc 2101 ccacacaata ctgtttgaac agttactcag ataattcaag atttccactt gcagttgtag 2161 aagaaccaat tacagtggaa gtggctttta gaaacccttt gaaagttcta cttttgttga 2221 ctgatttgtc attgctttgg aagtttcatc ctaaagattt cagtggaaag gataatgaag 2281 aagttaaaca actagttaca agtgaacctg aaatgattgg agctgaagtt atttcagagt 2341 tcttaattaa tggcgaagaa tcaaaagtgg caagactaaa gctctttccc catcacatag 2401 gggagctgca tattctggga gttgtttata atcttggcac tattcagggc tctatgacag 2461 tagatggcat tggtgctctt cccggatgtc acacaggaaa atattccttg agtatgtcag 2521 tccgagggaa gcaggattta gaaattcaag gtcctcgact taacaacaca aaagaagaga 2581 aaacatctgt taaatatggc cctgatcgac gtttagatcc cataatcaca gaagaaatgc 2641 cactgttgga ggtgttcttt atacattttc ctacagggct tctctgtgga gaaatccgaa 2701 aagcatatgt agaatttgtc aatgtcagca aatgtccact tactggattg aaggttgttt 2761 ctaaacgtcc agagttcttt actttcggtg gtaatactgc tgttctaaca ccactaagtc 2821 cctcagcttc tgagaattgt agtgcttaca agactgttgt gacagatgct acctctgtgt 2881 gtacagcact catatcatca gcttcttctg tagactttgg cattggcaca ggaagtcaac 2941 cagaggtgat tcctgttccc cttcctgaca ctgttcttct acccggagcc tcagtgcagc 3001 tgccaatgtg gttacgtggg cctgatgaag aaggtgtcca tgaaattaac tttttgtttt 3061 actatgaaag tgtcaaaaag cagccaaaaa tacggcacag aatattaaga cacactgcaa 3121 ttatttgtac cagtcggtct ttaaatgtac gggccactgt ctgcagaagt aattctcttg 3181 aaaatgaaga aggcagagga ggcaatatgc tagtctttgt ggatgtggaa aataccaata 3241 ctagtgaagc aggcgttaag gaattccaca tagtgcaagt atcaagtagt agcaaacact 3301 ggaagttaca gaaatctgta aatctttctg aaaacaaaga taccaaactt gccagtaggg 3361 agaagggaaa gttttgcttt aaggcaataa gatgtgagaa agaagaagcg gccacacagt 3421 cctctgaaaa atataccttt gcagatatca tctttggaaa tgaacagata ataagttcag 3481 caagcccatg tgcagacttc ttttatcgaa gtttatcttc tgaattgaaa aaaccacaag 3541 ctcacttgcc tgtgcataca gaaaaacagt caacagagga tgctgtgaga ttgattcaaa 3601 aatgcagtga ggtagatttg aatattgtca tattatggaa ggcatacgtt gtggaagaca 3661 gtaaacagct tattttggaa ggtcaacatc atgttattct tcgcactata ggaaaagaag 3721 ccttttcata tcctcagaaa caggagccac cagaaatgga actattgaaa tttttcaggc 3781 cagaaaacat tacagtttcc tcaaggccat cagtagagca gctttctagt ctcattaaaa 3841 cgagtcttca ctacccagaa tcatttaatc atccatttca tcaaaaaagc ctttgtttag 3901 taccagtcac tcttttactt tccaattgtt ctaaggctga tgtagatgtc atagttgatc 3961 ttcggcataa aacaacaagt ccagaagcac tggaaatcca tggatcattc acatggcttg 4021 gacaaacaca gtataaactt caacttaaaa gccaggagat tcacagtctg cagctgaaag 4081 catgctttgt tcatacaggt gtttataacc ttggaactcc tagggtattt gccaagttat 4141 cggaccaagt tacagtgttt gaaacaagtc agcagaattc catgcctgcc ctgatcatca 4201 tcagtaatgt gttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 4261 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 4321 caatcaacct ctggatta