Construct: ORF ccsbBroad304_11663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015218.1_s304c1, BRDN0000404603
Derived from:
ccsbBroadEn_11663
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDXDC1 (23042)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11663
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285449.1 91.7% 86% (many diffs)
2 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030209.2 91.7% 86% (many diffs)
3 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324020.1 91.5% 85.8% (many diffs)
4 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450196.1 89.1% 85.8% (many diffs)
5 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023065.1 88.8% 83.3% (many diffs)
6 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450194.1 88.6% 85.4% (many diffs)
7 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450195.1 88.3% 82% (many diffs)
8 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452517.1 88.3% 82% (many diffs)
9 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324021.1 86.6% 81.1% (many diffs)
10 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030210.2 86.6% 81.1% (many diffs)
11 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450197.1 83.8% 78.3% (many diffs)
12 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452518.1 83.8% 78.3% (many diffs)
13 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030207.1 83.5% 77.8% (many diffs)
14 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452516.1 83.2% 79.6% (many diffs)
15 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285450.2 79.2% 78.3% (many diffs)
16 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030208.2 78.8% 73.2% (many diffs)
17 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030205.2 72.4% 72.4% 1573_2169del
18 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023063.1 70.4% 70.4% 0_1ins45;1528_2124del
19 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030206.1 68.7% 68.7% 158_159ins81;1492_2088del
20 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030204.1 67.5% 67% (many diffs)
21 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_015027.4 66.4% 66.4% 1573_2364del
22 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725225.2 66.4% 66.4% 1573_2364del
23 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324019.2 66.3% 66.3% 93_94insAGA;1570_2361del
24 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725224.2 65.2% 65.1% (many diffs)
25 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023060.1 65.2% 65.1% (many diffs)
26 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030202.1 65% 64.5% (many diffs)
27 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_005255173.1 64.7% 64.1% (many diffs)
28 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725223.1 64.7% 64.1% (many diffs)
29 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285447.1 64.5% 64.5% 0_1ins45;1528_2319del
30 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_005255176.3 64.5% 64.5% 0_1ins45;1528_2319del
31 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023059.1 64.5% 64.5% 0_1ins45;1528_2319del
32 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023061.2 64.5% 64.5% 0_1ins45;1528_2319del
33 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023062.1 64.5% 64.5% 0_1ins45;1528_2319del
34 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030203.2 64.5% 64.5% 0_1ins45;1528_2319del
35 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452515.1 64.5% 64.5% 0_1ins45;1528_2319del
36 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285444.2 63% 63% 158_159ins81;1492_2283del
37 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725228.2 63% 63% 158_159ins81;1492_2283del
38 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285445.2 62.9% 62.9% 93_94insAGA;155_156ins81;1489_2280del
39 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030200.1 62.2% 61.8% (many diffs)
40 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725226.2 61.4% 60.7% (many diffs)
41 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_006720865.2 61.1% 61.1% 0_1ins45;113_114ins81;1447_2238del
42 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023064.1 61.1% 61.1% 0_1ins45;113_114ins81;1447_2238del
43 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030201.1 59% 58.5% (many diffs)
44 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285448.1 54.9% 54.9% 0_1ins45;113_114ins228;1300_2091del
45 human 283970 PDXDC2P-NPIPB14P nuclear pore complex-intera... NR_003610.1 34.7% (many diffs)
46 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001039533.2 64.5% 68% (many diffs)
47 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_053181.3 58.2% 61.3% (many diffs)
48 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001291017.1 58% 61.2% (many diffs)
49 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001357225.1 57.9% 61% (many diffs)
50 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246053.2 57.6% 60.7% (many diffs)
51 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246054.3 57.5% 60.6% (many diffs)
52 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246055.3 55.3% 58.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1638
ORF length:
1572
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cgcgtccctg gagaagatag cagaccccac gttagctgaa atgggaaaaa
121acttgaagga ggcagtgaag atgctggagg acagtcagag aagaacagaa gaggaaaatg
181gaaagaagct catatccgga gatattccag gcccactcca gggcagtggg caagatatgg
241tgagcatcct ccagttagtt cagaatctca tgcatggaga tgaagatgag gagccccaga
301gccccagaat ccaaaatatt ggagaacaag gtcatatggc tttgttggga catagtctgg
361gagcttatat ttcaactctg gacaaagaga agctgagaaa acttacaact aggatacttt
421cagataccac cttatggcta tgcagaattt tcagatatga aaatgggtgt gcttatttcc
481acgaagagga aagagaagga cttgcaaaga tatgtaggct tgccattcat tctcgatatg
541aagacttcgt agtggatggc ttcaatgtgt tatataacaa gaagcctgtc atatatctta
601gtgctgctgc tagacctggc ctgggccaat acctttgtaa tcagctcggc ttgcccttcc
661cctgcttgtg ccgtgtaccc tgtaacactg tgtttggatc ccagcatcag atggatgttg
721ccttcctgga gaaactgatt aaagatgata tagagcgagg aagactgccc ctgttgcttg
781tcgcaaatgc aggaacggca gcagtaggac acacagacaa gattgggaga ttgaaagaac
841tctgtgagca gtatggcata tggcttcatg tggagggtgt gaatctggca acattggctc
901tgggttatgt ctcctcatca gtgctggctg cagccaaatg tgatagcatg acgatgactc
961ctggcccgtg gctgggtttg ccagctgttc ctgcggtgac actgtataaa cacgatgacc
1021ctgccttgac tttagttgct ggtcttacat caaataagcc cacagacaaa ctccgtgccc
1081tgcctctgtg gttatcttta caatacttgg gacttgatgg gtttgtggag aggatcaagc
1141atgcctgtca actgagtcaa cggttgcagg aaagtttgaa gaaagtgaat tacatcaaaa
1201tcttggtgga agatgagctc agctccccag tggtggtgtt cagatttttc caggaattac
1261caggctcaga tccggtgttt aaagccgtcc cagtgcccaa catgacacct tcaggagtcg
1321gccgggagag gcactcgtgt gacgcgctga atcgctggct gggagaacag ctgaagcagc
1381tggtgcctgc aagcggcctc acagtcatgg atctggaagc tgagggcacg tgtttgcggt
1441tcagcccttt gatgaccgca gcagttttag gaactcgggg agaggatgtg gatcagctcg
1501tagcctgcat agaaagcaaa ctgccagtgc tgtgctgtac gctccagttg cgtgaagagt
1561tcaagcagga agtggaagca acagcaggtc tcctatatgt tgatgaccct aactggtctg
1621gaataggggt tgtcaggtac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1681accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1741agtcgacaat caacctctgg atta

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