Transcript: Human XM_024450195.1

PREDICTED: Homo sapiens pyridoxal dependent decarboxylase domain containing 1 (PDXDC1), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PDXDC1 (23042)
Length:
2124
CDS:
140..1690

Additional Resources:

NCBI RefSeq record:
XM_024450195.1
NBCI Gene record:
PDXDC1 (23042)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450195.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133781 CCTTATGGCTATGCAGAATTT pLKO.1 558 CDS 100% 13.200 6.600 Y PDXDC2P-NPIPB14P n/a
2 TRCN0000163994 CCACGTTAGCTGAAATGGGAA pLKO.1 225 CDS 100% 2.640 1.320 Y PDXDC1 n/a
3 TRCN0000135390 GCTTATTTCCACGAAGAGGAA pLKO.1 599 CDS 100% 2.640 1.320 Y PDXDC2P-NPIPB14P n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450195.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11663 pDONR223 100% 88.3% 82% None (many diffs) n/a
2 ccsbBroad304_11663 pLX_304 0% 88.3% 82% V5 (many diffs) n/a
3 TRCN0000475295 AGTCTTGCGTGTCTGTGAATAAAT pLX_317 24% 88.3% 82% V5 (many diffs) n/a
4 ccsbBroadEn_10342 pDONR223 100% 78.3% 76.9% None (many diffs) n/a
5 ccsbBroad304_10342 pLX_304 0% 78.3% 76.9% V5 (many diffs) n/a
6 TRCN0000479086 GTGACACGCCACTTGGAGCACCGT pLX_317 32% 78.3% 76.9% V5 (many diffs) n/a
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