Construct: ORF ccsbBroad304_11690
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001278.1_s304c1, BRDN0000402607
- Derived from:
- ccsbBroadEn_11690
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHLDB1 (23187)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11690
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542715.3 | 14% | 14% | 1_1860del |
| 2 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144759.3 | 7.6% | 7.6% | 1_3654del |
| 3 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271474.5 | 7.5% | 7.5% | 1_3720del |
| 4 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271473.3 | 7.3% | 7.3% | 1_3792del;3956_3988del |
| 5 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144758.3 | 7.3% | 7.3% | 1_3795del;3959_3991del |
| 6 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_015157.4 | 7.3% | 7.3% | 1_3795del;3959_3991del |
| 7 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271472.3 | 7.2% | 7.2% | 1_3837del;4001_4033del |
| 8 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718803.3 | 7.1% | 7.1% | 1_3921del |
| 9 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271471.3 | 7.1% | 7.1% | 1_3933del |
| 10 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718802.3 | 7.1% | 7.1% | 1_3921del;4085_4117del |
| 11 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542713.2 | 7.1% | 7.1% | 1_3921del;4085_4117del |
| 12 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542711.2 | 7.1% | 7.1% | 1_3924del;4088_4120del |
| 13 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271470.3 | 7% | 7% | 1_3933del;4097_4129del |
| 14 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271469.3 | 7% | 7% | 1_3978del |
| 15 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718801.3 | 7% | 7% | 1_3966del;4130_4162del |
| 16 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271468.3 | 7% | 7% | 1_3978del;4142_4174del |
| 17 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718800.3 | 6.9% | 6.9% | 1_4062del |
| 18 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718799.3 | 6.8% | 6.8% | 1_4062del;4226_4258del |
| 19 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718798.3 | 6.8% | 6.8% | 1_4107del;4271_4303del |
| 20 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017410.1 | 6.7% | 6.7% | 1_4149del;4313_4345del |
| 21 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017409.1 | 6.7% | 6.7% | 1_4206del |
| 22 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017408.1 | 6.6% | 6.6% | 1_4233del |
| 23 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542710.2 | 6.6% | 6.6% | 1_4251del;4415_4447del |
| 24 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718797.3 | 6.5% | 6.5% | 1_4278del;4442_4474del |
| 25 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718796.4 | 6.5% | 6.5% | 1_4281del;4445_4477del |
| 26 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542708.3 | 6.5% | 6.5% | 1_4284del;4448_4480del |
| 27 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542709.2 | 6.5% | 6.5% | 1_4284del;4448_4480del |
| 28 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017407.1 | 6.5% | 6.5% | 1_4290del;4454_4486del |
| 29 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542707.2 | 6.5% | 6.5% | 1_4293del;4457_4489del |
| 30 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542706.2 | 6.4% | 6.4% | 1_4377del |
| 31 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542705.2 | 6.4% | 6.4% | 1_4377del;4541_4573del |
| 32 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542704.2 | 6.4% | 6.4% | 1_4422del |
| 33 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005277680.3 | 6.3% | 6.3% | 1_4419del;4583_4615del |
| 34 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542703.2 | 6.3% | 6.3% | 1_4422del;4586_4618del |
| 35 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_947813.2 | 4% | (many diffs) | |
| 36 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_001747797.1 | 4% | (many diffs) | |
| 37 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509933.3 | 13.6% | 14.7% | (many diffs) |
| 38 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_017313091.2 | 10.7% | 11.5% | (many diffs) |
| 39 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243983.1 | 7.7% | 8.3% | (many diffs) |
| 40 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243982.1 | 7.3% | 8% | (many diffs) |
| 41 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243981.1 | 7.2% | 7.8% | (many diffs) |
| 42 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243980.1 | 7.1% | 7.7% | (many diffs) |
| 43 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243978.1 | 7% | 7.6% | (many diffs) |
| 44 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243976.1 | 6.9% | 7.5% | (many diffs) |
| 45 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243975.1 | 6.8% | 7.4% | (many diffs) |
| 46 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | NM_153537.4 | 6.8% | 7.3% | (many diffs) |
| 47 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243974.1 | 6.7% | 7.3% | (many diffs) |
| 48 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243979.1 | 6.7% | 7.2% | (many diffs) |
| 49 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243973.1 | 6.7% | 7.2% | (many diffs) |
| 50 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243972.1 | 6.6% | 7.1% | (many diffs) |
| 51 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243971.1 | 6.6% | 7.1% | (many diffs) |
| 52 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243970.1 | 6.6% | 7.1% | (many diffs) |
| 53 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509928.4 | 6.5% | 7% | (many diffs) |
| 54 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243977.1 | 6.5% | 7% | (many diffs) |
| 55 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243969.1 | 6.4% | 7% | (many diffs) |
| 56 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243968.1 | 6.4% | 6.9% | (many diffs) |
| 57 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243967.1 | 6.4% | 6.9% | (many diffs) |
| 58 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243966.1 | 6.3% | 6.8% | (many diffs) |
| 59 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243965.1 | 6.3% | 6.8% | (many diffs) |
| 60 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243964.1 | 6.2% | 6.8% | (many diffs) |
| 61 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243963.1 | 6.2% | 6.7% | (many diffs) |
| 62 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243962.1 | 6.1% | 6.7% | (many diffs) |
| 63 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243961.1 | 6.1% | 6.6% | (many diffs) |
| 64 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243960.1 | 6.1% | 6.6% | (many diffs) |
| 65 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243957.1 | 6.1% | 6.6% | (many diffs) |
| 66 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243958.1 | 6.1% | 6.6% | (many diffs) |
| 67 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243956.1 | 6% | 6.5% | (many diffs) |
| 68 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243955.1 | 6% | 6.5% | (many diffs) |
| 69 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243953.1 | 6% | 6.5% | (many diffs) |
| 70 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243954.1 | 6% | 6.5% | (many diffs) |
| 71 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509907.3 | 6% | 6.4% | (many diffs) |
| 72 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509916.3 | 6% | 6.4% | (many diffs) |
| 73 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509919.4 | 6% | 6.4% | (many diffs) |
| 74 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243959.1 | 4.3% | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 369
- ORF length:
- 303
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg cggcaagatt aaatcatgga agaagcgctg gtttgtcttc gaccggctca 121 agcgcaccct ttcctattat gtggacaagc atgagacgaa gctgaaggga gtcatctatt 181 tccaggccat tgaggaagtg tactacgacc acctgcgcag tgcagccaag agcccgaacc 241 cagccctcac cttctgcgta aagacccatg accggctgta ctacatggtg gccccatctg 301 cagaggccat gcgtatctgg atggatgtca ttgtcacagg ggctgagggc tacactcagt 361 tcatgaacta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 421 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 481 tcaacctctg gatta