Construct: ORF ccsbBroad304_11737
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005766.1_s304c1, BRDN0000411558
- Derived from:
- ccsbBroadEn_11737
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABCB9 (23457)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11737
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23457 | ABCB9 | ATP binding cassette subfam... | NM_001243014.2 | 86.9% | 85.6% | (many diffs) |
| 2 | human | 23457 | ABCB9 | ATP binding cassette subfam... | NM_203444.4 | 86.6% | 85.3% | (many diffs) |
| 3 | human | 23457 | ABCB9 | ATP binding cassette subfam... | NM_019625.4 | 77.2% | 76.1% | (many diffs) |
| 4 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_011538095.2 | 77.2% | 76.1% | (many diffs) |
| 5 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_011538096.2 | 77.2% | 76.1% | (many diffs) |
| 6 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_017019103.1 | 77.2% | 76.1% | (many diffs) |
| 7 | human | 23457 | ABCB9 | ATP binding cassette subfam... | NM_019624.3 | 71.6% | 70.4% | (many diffs) |
| 8 | human | 23457 | ABCB9 | ATP binding cassette subfam... | NM_001243013.2 | 69% | 67.8% | (many diffs) |
| 9 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_001748645.2 | 66% | (many diffs) | |
| 10 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_001748647.2 | 59% | (many diffs) | |
| 11 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_005253558.2 | 48.8% | 44.8% | (many diffs) |
| 12 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_011538098.2 | 48.8% | 44.8% | (many diffs) |
| 13 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_024448909.1 | 43.9% | 39.6% | (many diffs) |
| 14 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XM_024448908.1 | 40.6% | 36.6% | (many diffs) |
| 15 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_429086.4 | 32.8% | (many diffs) | |
| 16 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_001748648.2 | 32.6% | (many diffs) | |
| 17 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_001748646.2 | 29.3% | (many diffs) | |
| 18 | human | 23457 | ABCB9 | ATP binding cassette subfam... | XR_002957301.1 | 29.1% | (many diffs) | |
| 19 | mouse | 56325 | Abcb9 | ATP-binding cassette, sub-f... | NM_019875.2 | 69.1% | 71.5% | (many diffs) |
| 20 | mouse | 56325 | Abcb9 | ATP-binding cassette, sub-f... | XR_001784728.1 | 44.9% | (many diffs) | |
| 21 | mouse | 56325 | Abcb9 | ATP-binding cassette, sub-f... | XM_017321012.1 | 44.7% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1854
- ORF length:
- 1788
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcg gctgtggaag gcggtggtgg tgactttggc cttcatgagt gtggacatct 121 gcgtgaccac ggccatctat gtcttcagcc acctggaccg cagcctcctg gaggacatcc 181 gccacttcaa catctttgac tcggtgctgg atctctgggc agcctgcctg taccgcagct 241 gcctgctgct gggagccacc attggtgtgg ccaagaacag tgcgctgggg ccccggcggc 301 tgcgggcctc gtggctggtc atcaccctcg tgtgcctctt cgtgggcatc tatgccatgg 361 tgaagctgct gctcttctca gaggtgcgca ggcccatccg ggacccctgg ttttgggccc 421 tgttcgtgtg gacgtacatt tcactcggcg catccttcct gctctggtgg ctgctgtcca 481 ccgtgcggcc aggcacccag gccctggagc caggggcggc caccgaggct gagggcttcc 541 ctgggagcgg ccggccaccg cccgagcagg cgtctggggc cacgctgcag aagctgctct 601 cctacaccaa gcccgacgtg gccttcctcg tggccgcctc cttcttcctc atcgtggcag 661 ctctgggaga gaccttcctg ccctactaca cgggccgcgc cattgatggc atcgtcatcc 721 agaaaagcat ggatcagttc agcacggctg tcgtcatcgt gtgcctgctg gccattggca 781 gctcatttgc cgcaggtatt cggggcggca tttttaccct catatttgcc agactgaaca 841 ttcgccttcg aaactgtctc ttccgctcac tggtgtccca ggagacaagc ttctttgatg 901 agaaccgcac aggggacctc atctcccgcc tgacctcgga caccaccatg gtcagcgacc 961 tggtctccca gaacatcaat gtcttcctgc ggaacacagt caaggtcacg ggcgtggtgg 1021 tcttcatgtt cagcctctca tggcagctct ccttggtcac cttcatgggc ttccccatca 1081 tcatgatggt gtccaacatc tacggcaagt actacaagag gctctccaaa gaggtccaga 1141 atgccctggc cagagcgagc aacacggcgg aggagaccat cagtgccatg aagactgtcc 1201 ggagcttcgc caatgaggag gaggaggcag aggtgtacct gcggaagctg cagcaggtgt 1261 acaagctgaa caggaaggag gcagctgcct acatgtacta cgtctggggc agcgggctca 1321 cactgctggt ggtccaggtc agcatcctct actacggggg ccaccttgtc atctcaggcc 1381 agatgaccag cggcaacctc atcgccttca tcatctacga gtttgtcctg ggagattgta 1441 tggagtccgt gggctccgtc tacagtggcc tgatgcaggg agtgggggct gctgagaagg 1501 tgttcgagtt catcgaccgg cagccgacca tggtgcacga tggcagcttg gcccccgacc 1561 acctggaggg ccgggtggac tttgagaatg tgaccttcac ctaccgcact cggccccaca 1621 cccaggtcct gcagaatgtc tccttcagcc tgtcccccgg caaggtgacg gccctggtgg 1681 ggccctcggg cagtgggaag agctcctgtg tcaacatcct ggagaacttc taccccctgg 1741 aggggggccg ggtgctgctg gacggcaagc ccatcagcgc ctacgaccac aagtacttgc 1801 accgtgtggt atgtgcacgg gcctgggcca cacttctccg ccctttctgc atctacccaa 1861 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1921 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta