Construct: ORF ccsbBroad304_11776

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011932.1_s304c1, BRDN0000404944
Derived from:
ccsbBroadEn_11776
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUMF2 (25870)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11776
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366649.2 30.9% 7.4% 1_95del;255_513del
2 human 25870 SUMF2 sulfatase modifying factor 2 NM_001146333.2 24.8% 24.8% 1_480del
3 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042470.3 24.4% 24.4% 1_492del
4 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042469.3 18.5% 18.5% 1_699del
5 human 25870 SUMF2 sulfatase modifying factor 2 NM_015411.4 17.6% 17.6% 1_744del
6 human 25870 SUMF2 sulfatase modifying factor 2 NM_001042468.3 17.4% 17.4% 1_753del
7 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366647.2 15.7% 10% 1_699del;774_891del;977_1011del
8 human 25870 SUMF2 sulfatase modifying factor 2 NM_001366648.2 15% 9.6% 1_744del;819_936del;1022_1056del
9 human 25870 SUMF2 sulfatase modifying factor 2 XM_011515254.3 12.4% 9.8% (many diffs)
10 human 25870 SUMF2 sulfatase modifying factor 2 XR_001744617.1 7.2% 1_853del;928_1045del;1131_2191del
11 human 25870 SUMF2 sulfatase modifying factor 2 XR_001744616.1 7.1% 1_898del;973_1090del;1176_2236del
12 human 25870 SUMF2 sulfatase modifying factor 2 XR_002956418.1 7% 1_1030del;1190_2250del
13 mouse 67902 Sumf2 sulfatase modifying factor 2 NM_026445.2 15% 15.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
225
ORF length:
159
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg cgtcctccgg ggggcatcct ggatcgacac agctgatggc tctgccaatc
121accgggcccg ggtcaccacc aggatgggca acactccaga ttcagcctca gacaacctcg
181gtttccgctg tgctgcagac gcaggccggc cgccagggga gctgtaccca actttcttgt
241acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
301gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)