Construct: ORF ccsbBroad304_12179

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012087.1_s304c1, BRDN0000409914
Derived from:
ccsbBroadEn_12179
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DZANK1 (55184)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12179
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55184 DZANK1 double zinc ribbon and anky... NR_160274.1 41.7% (many diffs)
2 human 55184 DZANK1 double zinc ribbon and anky... NR_160273.1 41.2% (many diffs)
3 human 55184 DZANK1 double zinc ribbon and anky... NM_001099407.1 32.7% 23.8% (many diffs)
4 human 55184 DZANK1 double zinc ribbon and anky... NM_001367611.1 32.4% 23.6% (many diffs)
5 human 55184 DZANK1 double zinc ribbon and anky... XM_017027915.2 32.4% 23.6% (many diffs)
6 human 55184 DZANK1 double zinc ribbon and anky... NM_001367612.1 32.2% 23.5% (many diffs)
7 human 55184 DZANK1 double zinc ribbon and anky... NM_001367613.1 32.2% 23.5% (many diffs)
8 human 55184 DZANK1 double zinc ribbon and anky... XM_017027913.2 31.9% 23.3% (many diffs)
9 human 55184 DZANK1 double zinc ribbon and anky... NM_001351684.2 31.9% 23.4% (many diffs)
10 human 55184 DZANK1 double zinc ribbon and anky... XM_017027912.2 31.7% 23.1% (many diffs)
11 human 55184 DZANK1 double zinc ribbon and anky... NM_001367614.1 31.6% 23.2% (many diffs)
12 human 55184 DZANK1 double zinc ribbon and anky... NM_001367617.1 31.6% 23.2% (many diffs)
13 human 55184 DZANK1 double zinc ribbon and anky... NM_001367618.1 31.6% 23.2% (many diffs)
14 human 55184 DZANK1 double zinc ribbon and anky... XM_011529271.3 31.6% 23.2% (many diffs)
15 human 55184 DZANK1 double zinc ribbon and anky... XM_011529272.2 31.6% 23.2% (many diffs)
16 human 55184 DZANK1 double zinc ribbon and anky... XM_017027910.1 31.6% 23.2% (many diffs)
17 human 55184 DZANK1 double zinc ribbon and anky... XM_017027911.1 31.6% 23.2% (many diffs)
18 human 55184 DZANK1 double zinc ribbon and anky... NM_001351683.2 31.5% 23.1% (many diffs)
19 human 55184 DZANK1 double zinc ribbon and anky... XM_011529268.2 31.2% 22.9% (many diffs)
20 human 55184 DZANK1 double zinc ribbon and anky... XM_006723584.2 28.1% 28.5% (many diffs)
21 human 55184 DZANK1 double zinc ribbon and anky... XM_017027916.2 27.6% 28.1% (many diffs)
22 human 55184 DZANK1 double zinc ribbon and anky... XM_024451934.1 18.5% 5.7% (many diffs)
23 human 55184 DZANK1 double zinc ribbon and anky... NM_001367619.1 17.4% 5.7% (many diffs)
24 human 55184 DZANK1 double zinc ribbon and anky... XM_017027918.2 17.2% 5.7% (many diffs)
25 human 55184 DZANK1 double zinc ribbon and anky... XM_017027919.2 17.2% 5.7% (many diffs)
26 human 55184 DZANK1 double zinc ribbon and anky... XR_001754314.2 16% (many diffs)
27 human 55184 DZANK1 double zinc ribbon and anky... NM_018152.3 13.1% 3.6% 0_1ins451;282T>C;291_1755del
28 human 55184 DZANK1 double zinc ribbon and anky... XM_017027920.2 13.1% 3.6% 0_1ins451;282T>C;291_1755del
29 mouse 241688 Dzank1 double zinc ribbon and anky... XM_006499516.3 33% 21.2% (many diffs)
30 mouse 241688 Dzank1 double zinc ribbon and anky... XM_006499515.3 31% 20% (many diffs)
31 mouse 241688 Dzank1 double zinc ribbon and anky... XM_006499514.3 29.4% 19% (many diffs)
32 mouse 241688 Dzank1 double zinc ribbon and anky... XM_011239534.2 28.8% 18.6% (many diffs)
33 mouse 241688 Dzank1 double zinc ribbon and anky... XM_011239533.2 28.3% 20.4% (many diffs)
34 mouse 241688 Dzank1 double zinc ribbon and anky... XM_006499512.3 27.8% 18% (many diffs)
35 mouse 241688 Dzank1 double zinc ribbon and anky... NM_172859.2 27.8% 18% (many diffs)
36 mouse 241688 Dzank1 double zinc ribbon and anky... XM_011239532.2 27.3% 17.7% (many diffs)
37 mouse 241688 Dzank1 double zinc ribbon and anky... XM_006499511.3 27.3% 17.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
807
ORF length:
741
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac tgctggttca gtgtgtgtcc ctcagatcat accactacga gtgcctcagc
121ctggaaaagc taaccatgaa attgataaca atacgctttt ggaaatgaaa tcagacactc
181cagatgtcaa catatattat actctggatg gcagcaaacc tgaatttcta aagagaattg
241gttatgggga aaataacaca tttaagtata taaaacctat tactctgcct gatggaaaaa
301tacaagttaa agctattgct gtctctaaag actgcagaca gagtggcatt gcgacaaagg
361tgtttcacgt agactatgaa ccaccaaata tagtctctcc tgaagacaat gttgaaaatg
421ttctcaaaga ttcttcaagg caggaattca aaaatggatt tgttggatca aaactaaaga
481aaaaatataa gaactctgaa aatcaacgca gctggaatgt taaccttaga aagtttccag
541tcccccggtt ttgcacacgt aagcggtcag aagtgtttga caagcacgga gataatgaga
601attcaaaggg agacagactt tctcaagtgt gcccactgcc ttgccccccg gccatcagat
661ccctttgctc gcttctgtca agaatgtggc tctcctgtcc cacccatatt tggctgtcgt
721ctcccacccc cagaaggagc tcagatgggc ttgtgtgcag aatgcagaag cttggtaccc
781atgaacactc ccatctgcgt ggtgtgtgcc caactttctt gtacaaagtg gttggtaagc
841ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
901ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)