Construct: ORF ccsbBroad304_12196

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008977.1_s304c1, BRDN0000409375
Derived from:
ccsbBroadEn_12196
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGGY (55277)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12196
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55277 FGGY FGGY carbohydrate kinase do... NM_001278224.2 100% 100%
2 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448227.1 73.4% 73.4% 1_273del
3 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448229.1 73.4% 73.4% 1_273del
4 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001677.1 68.6% 68.6% 1_273del;597_668del
5 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001678.1 68.6% 68.6% 1_273del;597_668del
6 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350797.2 60.4% 60.4% 1_495del
7 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350796.2 57.4% 57.4% 1_561del
8 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001673.2 57.4% 57.4% 1_561del
9 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448220.1 57.4% 57.4% 1_561del
10 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001668.1 57.1% 57.1% 1_495del;819_890del
11 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001669.2 57.1% 57.1% 1_495del;819_890del
12 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001670.2 57.1% 57.1% 1_495del;819_890del
13 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001671.1 57.1% 57.1% 1_495del;819_890del
14 human 55277 FGGY FGGY carbohydrate kinase do... NM_001244714.2 54.4% 54.4% 1_633del
15 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001656.1 54.4% 54.4% 1_561del;885_956del
16 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001657.2 54.4% 54.4% 1_561del;885_956del
17 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001659.2 54.4% 54.4% 1_561del;885_956del
18 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001660.2 54.4% 54.4% 1_561del;885_956del
19 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001661.2 54.4% 54.4% 1_561del;885_956del
20 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001662.2 54.4% 54.4% 1_561del;885_956del
21 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001663.2 54.4% 54.4% 1_561del;885_956del
22 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001664.2 54.4% 54.4% 1_561del;885_956del
23 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350795.2 51.7% 51.7% 1_633del;957_1028del
24 human 55277 FGGY FGGY carbohydrate kinase do... XM_011541736.3 51.7% 51.7% 1_633del;957_1028del
25 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001655.1 51.7% 51.7% 1_633del;957_1028del
26 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350792.2 50.9% 50.9% 1_729del
27 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350793.2 50.9% 50.9% 1_729del
28 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448185.1 48.5% 48.5% 1_729del;1053_1124del
29 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448196.1 48.5% 48.5% 1_729del;1053_1124del
30 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350791.2 45.7% 45.7% 1_897del
31 human 55277 FGGY FGGY carbohydrate kinase do... NM_018291.4 45.7% 45.7% 1_897del
32 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001645.1 45.7% 45.7% 1_897del
33 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001646.1 45.7% 45.7% 1_897del
34 human 55277 FGGY FGGY carbohydrate kinase do... NM_001113411.2 43.8% 43.8% 1_897del;1221_1292del
35 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350790.2 43.8% 43.8% 1_897del;1221_1292del
36 human 55277 FGGY FGGY carbohydrate kinase do... XM_011541730.1 43.8% 43.8% 1_897del;1221_1292del
37 human 55277 FGGY FGGY carbohydrate kinase do... XM_011541731.1 43.8% 43.8% 1_897del;1221_1292del
38 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001643.2 43.8% 43.8% 1_897del;1221_1292del
39 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448176.1 43.8% 43.8% 1_897del;1221_1292del
40 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350799.2 43.7% 40.2% 1_561del;1080_1081ins95;1137_1138ins85
41 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350798.2 41.4% 38.1% (many diffs)
42 human 55277 FGGY FGGY carbohydrate kinase do... NM_001350794.2 34.8% 32.1% 1_897del;1416_1417ins95;1473_1474ins85
43 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001652.1 34.8% 32.1% 1_897del;1416_1417ins95;1473_1474ins85
44 human 55277 FGGY FGGY carbohydrate kinase do... XM_024448207.1 34.8% 32.1% 1_897del;1416_1417ins95;1473_1474ins85
45 human 55277 FGGY FGGY carbohydrate kinase do... XM_017001649.1 33.3% 30.7% (many diffs)
46 human 55277 FGGY FGGY carbohydrate kinase do... XR_001737286.1 31.7% 1_1010del;1185_1186ins148;1619_1767del
47 human 55277 FGGY FGGY carbohydrate kinase do... XR_001737285.1 31.3% 1_1033del;1208_1209ins148;1642_1790del
48 human 55277 FGGY FGGY carbohydrate kinase do... XR_001737284.1 30.6% 1_1078del;1253_1254ins148;1687_1835del
49 human 55277 FGGY FGGY carbohydrate kinase do... NR_103473.2 28.9% (many diffs)
50 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503476.1 89.3% 92.4% (many diffs)
51 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_017320432.1 65.7% 67.9% (many diffs)
52 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503474.1 51.4% 53% (many diffs)
53 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240637.2 42.1% 38.4% (many diffs)
54 mouse 75578 Fggy FGGY carbohydrate kinase do... NM_001113412.1 40.9% 42.2% (many diffs)
55 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503461.3 40.9% 42.2% (many diffs)
56 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240633.2 40.3% 41.6% (many diffs)
57 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240636.1 35.5% 35.8% (many diffs)
58 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240635.1 35.2% 34.8% (many diffs)
59 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240639.2 34.4% 34.8% (many diffs)
60 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_017320430.1 31.7% 25% (many diffs)
61 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_017320429.1 31.2% 24.7% (many diffs)
62 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503468.3 28.7% 23.5% (many diffs)
63 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503472.3 28% 23.9% (many diffs)
64 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240644.1 28% 23.3% (many diffs)
65 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_006503470.3 27.7% 23.6% (many diffs)
66 mouse 75578 Fggy FGGY carbohydrate kinase do... XM_011240643.2 27.6% 23.6% (many diffs)
67 mouse 75578 Fggy FGGY carbohydrate kinase do... XR_001784213.1 19.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
822
ORF length:
756
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gatcagcaaa gacccgattt ttgtaccagg cgtctggggg ccttatttct
121cagccatggt acctgggttc tggctgaatg aaggtggtca gagcgttact ggaaaattga
181tagaccacat ggtacaaggc catgctgctt ttccagaact acaagtaaag gccacagcca
241gatgccagag tatatatgca tatttgaaca gtcacctgga tctgattaag aaggctcagc
301ctgtgggttt ccttactgtt gatttacatg tttggccaga tttccatggc aaccggtctc
361ccttagcaga tctgacacta aagggcatgg tcaccggatt gaaactgtct caggaccttg
421atgatcttgc cattctctac ctggccacag ttcaagccat tgctttgggg actcgcttca
481ttatagaagc catggaggca gcagggcact caatcagtac tcttttccta tgtggaggcc
541tcagcaagaa tccccttttt gtgcaaatgc atgcggacat tactggcatg cctgtggtcc
601tgtcgcaaga ggtggagtcc gttcttgtgg gtgctgctgt tctgggtgcc tgtgcctcag
661gggatttcgc ttctgtacag gaagcaatgg caaaaatgag caaagttggg aaagttgtgt
721tcccgagact acaggataaa aaatactatg ataagaaata ccaagtattc ctgaagctgg
781ttgaacacca gaaggagtat ttggcgatca tgaatgatga ctgcccaact ttcttgtaca
841aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
901ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)