Construct: ORF ccsbBroad304_12351

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016236.1_s304c1, BRDN0000401158
Derived from:
ccsbBroadEn_12351
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ODF2L (57489)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12351
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57489 ODF2L outer dense fiber of sperm ... NM_001366779.1 14.7% 14.4% 111_227del;332_333insA;345_1539del
2 human 57489 ODF2L outer dense fiber of sperm ... NM_001366782.1 14.7% 14.4% 111_227del;332_333insA;345_1539del
3 human 57489 ODF2L outer dense fiber of sperm ... NM_001184766.1 12.7% 12.5% (many diffs)
4 human 57489 ODF2L outer dense fiber of sperm ... NM_001366783.1 12.4% 12.1% (many diffs)
5 human 57489 ODF2L outer dense fiber of sperm ... NM_001184765.1 12.1% 11.9% (many diffs)
6 human 57489 ODF2L outer dense fiber of sperm ... NM_020729.3 12.1% 11.9% (many diffs)
7 human 57489 ODF2L outer dense fiber of sperm ... NM_001007022.3 11.8% 11.6% (many diffs)
8 human 57489 ODF2L outer dense fiber of sperm ... NM_001366781.1 11.7% 11.4% (many diffs)
9 human 57489 ODF2L outer dense fiber of sperm ... NM_001366784.1 11.7% 11.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
294
ORF length:
228
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt gctagaaaat ctaactgata atgaaagtga aaatactaat cttaagaaga
121aggtatttga aaaggaggcc catatccaag aactttcttg tttgtttcag agtgaaaaga
181gcttagaaac caagatagcc aagtggaacc tgcaatcaag aatgaataag aatgaggcta
241tagtgatgaa agaagcaagt aggcaaaaaa ctgtagcttt aaaaaaaggc atctacccaa
301ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
361cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)