Construct: ORF ccsbBroad304_12354
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008108.1_s304c1, BRDN0000409876
- Derived from:
- ccsbBroadEn_12354
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTUS1 (57509)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12354
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001330470.1 | 70% | 69.8% | 1_306del;404A>C |
| 2 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001166393.1 | 57.7% | 57.5% | 1_525del;623A>C |
| 3 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_020749.4 | 54.9% | 54.8% | 1_588del;686A>C |
| 4 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001001931.2 | 46.3% | 46.2% | 1_831del;929A>C |
| 5 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001001925.2 | 19.7% | 19.6% | 1_2928del;3026A>C |
| 6 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363062.1 | 19.7% | 19.6% | 1_2928del;3026A>C |
| 7 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363060.2 | 19.3% | 14.6% | (many diffs) |
| 8 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_005273581.3 | 19.3% | 14.6% | (many diffs) |
| 9 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001001924.2 | 18.8% | 18.8% | 1_3090del;3188A>C |
| 10 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363058.1 | 18.8% | 18.8% | 1_3090del;3188A>C |
| 11 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363059.1 | 18.8% | 18.8% | 1_3090del;3188A>C |
| 12 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363061.1 | 18.8% | 18.8% | 1_3090del;3188A>C |
| 13 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_011544595.3 | 18.7% | 18.6% | 1_3090del;3188A>C;3595_3624del |
| 14 | human | 57509 | MTUS1 | microtubule associated scaf... | NM_001363057.2 | 18.5% | 14% | (many diffs) |
| 15 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_005273578.3 | 18.5% | 14% | (many diffs) |
| 16 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_017013698.2 | 18.5% | 14% | (many diffs) |
| 17 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_017013699.1 | 18.5% | 14% | (many diffs) |
| 18 | human | 57509 | MTUS1 | microtubule associated scaf... | XM_024447213.1 | 18.5% | 14% | (many diffs) |
| 19 | human | 57509 | MTUS1 | microtubule associated scaf... | NR_156437.1 | 11.5% | 1_3341del;3439A>C;4062_6212del | |
| 20 | human | 57509 | MTUS1 | microtubule associated scaf... | XR_001745567.2 | 7.5% | 1_3170del;3268A>C;3464_3465ins426 | |
| 21 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | NM_001005865.3 | 46.5% | 50.2% | (many diffs) |
| 22 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | XM_006509241.3 | 43.3% | 46.8% | (many diffs) |
| 23 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | NM_001005864.3 | 39.3% | 42.5% | (many diffs) |
| 24 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | NM_001005863.2 | 16.9% | 18.2% | (many diffs) |
| 25 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | NM_001286413.1 | 16.9% | 18.2% | (many diffs) |
| 26 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | XM_006509239.1 | 16.2% | 17.5% | (many diffs) |
| 27 | mouse | 102103 | Mtus1 | mitochondrial tumor suppres... | XM_006509240.3 | 16.2% | 17.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 786
- ORF length:
- 720
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgca attgcaagag cagtttgaca acttaaatgc tgcgcatgaa acctctaagt 121 tggaaattga agctagccac tcagagaaac ttgaattgct aacgaaggcc tatgaagcct 181 ccctttcaga aattaagaaa ggccatgaaa tagaaaagaa atcgcttgaa gatttacttt 241 ctgagaagca ggaatcgcta gagaagcaaa tcaatgatct gaagagtgaa aatgatgctt 301 taaatgaaaa attgaaatca gaagaacaaa aaagaagagc aagagaaaaa gcaaatttga 361 aaaatcctca gatcatgtat ctagaacagg agttagaaag cctgaaagct gtgttagaga 421 tcaagaatga gaaactgcat caacaggaca tcaagttaat gaaaatggag aaactggtgg 481 acaacaacac agcattggtt gacaaattga agcgtttcca gcaggagaat gaagaattga 541 aagctcggat ggacaagcac atggcaatct caaggcagct ttccacggag caggctgttc 601 tgcaagagtc gctggagaag gagtcgaaag tcaacaagcg actctctatg gaaaacgagg 661 agcttctgtg gaaactgcac aatggggacc tgtgtagccc caagagatcc cccacatcct 721 ccgccatccc tttgcagtca ccaaggaatt cgggctcctt ccctagcccc agcatttcac 781 ccagatgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg 841 gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca 901 acctctggat ta