Transcript: Human NM_001166393.1

Homo sapiens microtubule associated scaffold protein 1 (MTUS1), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-06-18
Taxon:
Homo sapiens (human)
Gene:
MTUS1 (57509)
Length:
3667
CDS:
272..1519

Additional Resources:

NCBI RefSeq record:
NM_001166393.1
NBCI Gene record:
MTUS1 (57509)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001166393.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000063673 GCCTAACACTATCCTGTAATT pLKO.1 2298 3UTR 100% 13.200 18.480 N MTUS1 n/a
2 TRCN0000288675 GCCTAACACTATCCTGTAATT pLKO_005 2298 3UTR 100% 13.200 18.480 N MTUS1 n/a
3 TRCN0000063674 CGGGACACTTACATTGAAGAA pLKO.1 761 CDS 100% 4.950 3.960 N MTUS1 n/a
4 TRCN0000063676 GCCTGTGGTAATACCAAGTTT pLKO.1 485 CDS 100% 5.625 3.938 N MTUS1 n/a
5 TRCN0000288614 GCCTGTGGTAATACCAAGTTT pLKO_005 485 CDS 100% 5.625 3.938 N MTUS1 n/a
6 TRCN0000042455 GCTGTGTTAGAGATCAAGAAT pLKO.1 1139 CDS 100% 5.625 3.938 N Mtus1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166393.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08738 pDONR223 100% 93.1% 90.8% None (many diffs) n/a
2 ccsbBroad304_08738 pLX_304 0% 93.1% 90.8% V5 (many diffs) n/a
3 TRCN0000476738 AAGCCACTAAGTTGCCGGTGGCTA pLX_317 26.8% 93.1% 90.8% V5 (many diffs) n/a
4 ccsbBroadEn_12354 pDONR223 100% 57.7% 57.5% None 1_525del;623A>C n/a
5 ccsbBroad304_12354 pLX_304 0% 57.7% 57.5% V5 1_525del;623A>C n/a
6 TRCN0000480502 TCTGGCAGATAGACTCTTAATTTT pLX_317 57.9% 57.7% 57.5% V5 1_525del;623A>C n/a
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