Construct: ORF ccsbBroad304_12427
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018378.1_s304c1, BRDN0000403725
- Derived from:
- ccsbBroadEn_12427
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AGBL5 (60509)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12427
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | XM_005264477.3 | 86.2% | 84.2% | (many diffs) |
| 2 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | NM_021831.6 | 78.5% | 78.1% | 1_276del;2352_2353ins47;2402_2658del |
| 3 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | XM_011533011.3 | 78.5% | 78.1% | 1_276del;2352_2353ins47;2402_2658del |
| 4 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | XM_011533012.2 | 78.5% | 78.1% | 1_276del;2352_2353ins47;2402_2658del |
| 5 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | XM_011533013.2 | 78.5% | 78.1% | 1_276del;2352_2353ins47;2402_2658del |
| 6 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | NM_001035507.3 | 74.7% | 74.8% | (many diffs) |
| 7 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | NR_104246.2 | 67.1% | 1_448del;2621_3235del | |
| 8 | human | 60509 | AGBL5 | ATP/GTP binding protein like 5 | NR_138023.1 | 66.5% | 1_454del;2627_3262del | |
| 9 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | NM_001048192.2 | 75% | 75.5% | (many diffs) |
| 10 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | NM_001294262.1 | 70.5% | 71.6% | (many diffs) |
| 11 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503873.3 | 69.8% | 70.2% | (many diffs) |
| 12 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503875.1 | 68.7% | 70% | (many diffs) |
| 13 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503876.1 | 68.7% | 70% | (many diffs) |
| 14 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503877.1 | 68.7% | 70% | (many diffs) |
| 15 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503874.3 | 68% | 67.2% | (many diffs) |
| 16 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503868.3 | 67.6% | 68.1% | (many diffs) |
| 17 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | NM_174849.3 | 67.4% | 65.9% | (many diffs) |
| 18 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503870.1 | 66.6% | 67.7% | (many diffs) |
| 19 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503871.1 | 66.6% | 67.7% | (many diffs) |
| 20 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503872.1 | 66.6% | 67.7% | (many diffs) |
| 21 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503869.3 | 65.9% | 65.2% | (many diffs) |
| 22 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503867.3 | 62.4% | 63.4% | (many diffs) |
| 23 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | XM_006503866.3 | 60.6% | 61.6% | (many diffs) |
| 24 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | NR_122117.1 | 58.1% | (many diffs) | |
| 25 | mouse | 231093 | Agbl5 | ATP/GTP binding protein-like 5 | NR_122116.1 | 56.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2238
- ORF length:
- 2172
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa catgaacaag cagagcaagc tgtattccca gggcatggcc ccctttgtgc 121 gcacactgcc cacccggcca cgctgggaac gcattcgaga ccggcccacc tttgagatga 181 cagagacgca gtttgtgtta tcctttgttc atcgtttcgt ggagggccgt ggggccacca 241 ccttcttcgc cttctgctac cccttctcct acagtgactg ccaggaactg ctaaaccagc 301 tagaccagcg ctttccggag aaccacccta cccatagcag ccccctggat accatctatt 361 accatcggga gctcctttgc tattctctgg atggacttcg tgtagatctg ctgacgatca 421 cttcctgcca tgggcttcga gaagatcgag agccccgtct agagcagcta tttcctgata 481 ccagcacccc tcgaccattc cgtttcgcag gcaagaggat attcttctta agcagtagag 541 tacacccagg ggagactcca tctagctttg tcttcaatgg ctttctggac ttcatcctcc 601 gacctgatga tccccgggcc caaaccctcc gtcgcctctt cgtctttaag ctgattccca 661 tgttgaaccc cgatggtgtg gtccggggac actaccgcac agactcacgt ggagtgaatc 721 tgaaccgtca gtacctgaag cctgatgccg tcctgcaccc ggccatctat ggggccaaag 781 ctgtgcttct ctaccaccat gtgcactctc gtctgaactc ccagagttcc tctgagcacc 841 agcccagttc ctgtctccct cctgatgctc ctgtttctga cctggagaaa gccaacaatc 901 tccaaaatga agctcagtgt gggcactcag ctgacaggca taacgctgaa gcctggaaac 961 aaacagagcc agcagaacag aagctcaaca gtgtgtggat tatgccacaa cagtctgcgg 1021 ggcttgaaga gtcagcccct gataccatcc cccccaaaga gagtggcgtt gcttactatg 1081 tggacctgca tggacatgct tccaaaaggg gctgcttcat gtacggaaac agctttagtg 1141 atgagagcac ccaggtggaa aacatgctat atccaaagct catctccttg aattcagccc 1201 acttcgactt ccagggctgc aatttctcag agaagaatat gtatgcccga gaccgtagag 1261 atggccagtc taaagaggga agcggccgtg ttgcaatcta caaagcctca gggataatcc 1321 acagctacac acttgaatgc aactacaaca ctggacgctc agtaaacagc atccctgctg 1381 cctgccatga caatgggcgt gccagccccc ctcccccgcc ggctttcccc tccagataca 1441 ctgtggaact atttgagcag gtgggacgag ctatggccat tgcagccctg gacatggcgg 1501 aatgtaatcc gtggccccga attgtactgt cagagcacag cagccttact aatctacggg 1561 cctggatgct gaaacatgta cgcaacagcc gaggcctaag cagcactctg aatgtgggtg 1621 tcaacaagaa gaggggcctt cgaactccac ccaaaagtca caatgggttg cctgtctcct 1681 gctccgaaaa caccttgagt cgggcacgaa gttttagcac cggcacaagt gccggtggta 1741 gcagcagcag ccaacaaaat tctccacaga tgaagaattc ccccagcttt ccttttcatg 1801 gcagtcggcc tgcagggctg ccaggcctgg gctctagtac ccaaaaggtc acccaccggg 1861 tgctgggccc cgtcagagag ccccgaagcc aggacaggag acggcagcag cagcccctga 1921 accatcgtcc tgcaggcagc ctcgctccat ccccagctcc tactagttct ggcccagcct 1981 cctcacacaa gctgggctcc tgtctactgc ctgattcatt caacatacca gggagcagtt 2041 gctcactctt gtcctctgga gacaaaccag aggctgtcat ggtaatcggg aaaggtctgc 2101 tagggactgg agctcggatg ccctgcatca agactcgatt gcagacctgt ccgaggagag 2161 tttccgccag gaggggtccc ggattcccca ggctaggccc aggttgggcc ggggctcacc 2221 gccgactcgc agagggatgc ccaactttct tgtacaaagt ggttggtaag cctatcccta 2281 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 2341 agtcgacaat caacctctgg atta