Construct: ORF ccsbBroad304_12504

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015509.1_s304c1, BRDN0000462217
Derived from:
ccsbBroadEn_12504
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPIN3 (64900)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12504
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64900 LPIN3 lipin 3 NM_001301860.2 100% 100%
2 human 64900 LPIN3 lipin 3 NM_022896.2 99.8% 99.8% 556_557insGCA
3 human 64900 LPIN3 lipin 3 XM_011529001.2 94% 94% 2042_2043ins153
4 human 64900 LPIN3 lipin 3 XM_011528996.2 88.5% 89.4% 2043_2287del;2362_2363ins77
5 human 64900 LPIN3 lipin 3 XM_011528997.3 88.5% 89.4% 2043_2287del;2362_2363ins77
6 human 64900 LPIN3 lipin 3 XM_011528998.3 88.5% 89.4% 2043_2287del;2362_2363ins77
7 human 64900 LPIN3 lipin 3 XM_011528999.3 88.5% 89.4% 2043_2287del;2362_2363ins77
8 human 64900 LPIN3 lipin 3 XM_011529000.2 88.3% 89.3% 556_557insGCA;2040_2284del;2359_2360ins77
9 human 64900 LPIN3 lipin 3 XR_430311.1 87.7% 1_156del;2273_2274ins77;2535_2536ins100
10 human 64900 LPIN3 lipin 3 XR_001754379.1 82.5% 1_156del;2199_2443del;2958_3096del
11 human 64900 LPIN3 lipin 3 XM_011529005.2 80.9% 80.6% (many diffs)
12 human 64900 LPIN3 lipin 3 XR_936610.2 79.9% 1_156del;2199_2334del;2568_2569ins280
13 human 64900 LPIN3 lipin 3 XM_011529003.1 79.3% 81.7% 2043_2178del;2271_2272ins421
14 human 64900 LPIN3 lipin 3 XM_011529004.1 78.8% 79% (many diffs)
15 human 64900 LPIN3 lipin 3 XR_001754380.1 78.7% 1_156del;1777_1778insAGCGC;2292_2293ins415
16 human 64900 LPIN3 lipin 3 XM_011529002.3 74.3% 75% 0_1ins396;1647_1891del;1966_1967ins77
17 human 64900 LPIN3 lipin 3 NR_126051.2 55.4% (many diffs)
18 human 64900 LPIN3 lipin 3 XM_005260516.2 54.5% 53.1% 1364_1365ins32;1395_1396ins1129
19 human 64900 LPIN3 lipin 3 XM_006723863.2 54.1% 53.9% (many diffs)
20 human 64900 LPIN3 lipin 3 XM_011529006.2 54.1% 53.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2625
ORF length:
2556
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaactacgtg gggcagctgg cggagacggt gtttgggacg gtgaaggagc
121tgtaccgggg cctgaaccca gccacactga gcggcggcat tgacgtgctg gtggtgaagc
181aggtggacgg ctcgttccgg tgctcaccct tccacgtgcg ttttggcaag ctgggcgtcc
241tgcggtcgcg ggagaaggtg gtagacattg agctcaatgg ggagcctgtg gacttgcaca
301tgaagcttgg ggacagcggg gaggccttct ttgttcagga gctggagagc gatgatgaac
361atgtgcctcc cggcctgtgc acctcaccca tcccttgggg gggtctgtct ggcttcccct
421cggactccca gctgggcact gccagtgagc ctgagggcct cgtcatggca ggcacggcct
481ccactgggcg gaggaagagg cgtcgcagga ggaaacccaa gcagaaagag gatgcagtgg
541caactgattc tagtccagag gaactggagg caggcgctga gagtgagcta tccctgccgg
601aaaagctgag gccagagccc ccaggcagtg tccagttgga agagaagtct tcactgcagc
661ccaaagacat ctacccctac tcggatggcg agtggccccc ccaggccagc ctctcagcag
721gtgagctaac atcccctaag agcgactcgg agctggaggt gcggaccccg gagcccagtc
781ccctaagagc cgagtcccac atgcagtggg cctgggggag gctgcctaag gtggccagag
841ctgagcggcc cgagtcctca gtggtccttg aaggcagagc tggggcaacc tctcctcctc
901ggggaggacc cagcactccc tctacctctg tggctggcgg cgtggaccct ttgggactcc
961caatccagca aacagaggct ggtgccgacc ttcagcctga cacagaggat cccactctag
1021tgggtccccc tctccacacc ccagagacag aggaaagcaa gactcagagc tctggggaca
1081tgggcctccc tcctgcctcc aagtcatgga gctgggccac tctggaggtt ccagttccca
1141ccgggcagcc agagagggtc tccaggggga aaggctcccc aaagagaagc cagcacctgg
1201gccccagtga catctacctg gatgacttgc cctccctgga ctctgagaat gcagcgcttt
1261acttccccca aagtgactct gggctggggg ccagaagatg gagtgaaccc agcagtcaga
1321agtccctgag ggaccccaac cctgaacatg aacctgaacc cactctggac acagtggata
1381caatagcact gtccctctgt ggtggactgg ctgacagccg ggacatctcc ctagagaaat
1441tcaaccagca cagcgtctct taccaggacc tcaccaaaaa ccccggactt ttggatgacc
1501caaacctagt ggtgaaaatc aatggaaagc attataactg ggctgtggct gcccccatga
1561tcctctccct gcaagccttc cagaaaaact tgcccaagag caccatggac aagctggaga
1621gggagaagat gccccggaag ggtgggcgat ggtggttttc ctggcgacgc agggacttcc
1681tggccgagga gcgcagtgcc cagaaggaga agactgcagc caaggagcag cagggggaga
1741agacagaagt cctgagcagt gatgacgatg ccccagacag ccctgtgatc ctggagatcc
1801cctccttgcc accctccact ccaccctcca ctcctaccta caagaagtcc ctccgcctct
1861cctccgatca gatccggcgc ctgaacctgc aagaaggtgc caatgatgtg gtcttcagcg
1921tgaccactca gtaccagggc acctgccgct gcaaggccac catctacctg tggaaatggg
1981acgacaaggt ggtcatctct gacatcgacg gcaccatcac caagtcagat gctctgggcc
2041atatcctgcc ccagctgggg aaagactgga cacaccaggg catcaccagt ctctatcaca
2101aaatccaact aaatgggtac aagttcctgt actgctcggc gcgggccatt ggcatggcgg
2161acctcaccaa ggggtacctg cagtgggtga gcgagggggg ctgtagcctc cccaagggcc
2221ccatccttct gtctcccagc agcctcttct ctgccctcca cagagaggtg atcgagaaga
2281aaccagaggt gttcaaggtc gcctgcctga gtgacatcca gcagctgttt ctgccccacg
2341gacagccctt ctatgctgcc tttgggaata ggcccaatga tgtctttgcc taccggcagg
2401tgggcctgcc tgagtcacgc atcttcacag tcaacccccg gggagagctc atccaggagc
2461tcataaagaa ccacaaatcc acgtatgagc ggcttggtga agtggtcgag ctcctcttcc
2521cacctgtggc ccgtggcccc agcacagacc tggccaaccc tgaatacagt aacttctgct
2581actggcggga gccactgcct gctgtggacc ttgataccct ggacttgcca actttcttgt
2641acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
2701gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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