Construct: ORF ccsbBroadEn_12504
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015509.1_s300c1, BRDN0000457260
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LPIN3 (64900)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64900 | LPIN3 | lipin 3 | NM_001301860.2 | 100% | 100% | |
| 2 | human | 64900 | LPIN3 | lipin 3 | NM_022896.2 | 99.8% | 99.8% | 556_557insGCA |
| 3 | human | 64900 | LPIN3 | lipin 3 | XM_011529001.2 | 94% | 94% | 2042_2043ins153 |
| 4 | human | 64900 | LPIN3 | lipin 3 | XM_011528996.2 | 88.5% | 89.4% | 2043_2287del;2362_2363ins77 |
| 5 | human | 64900 | LPIN3 | lipin 3 | XM_011528997.3 | 88.5% | 89.4% | 2043_2287del;2362_2363ins77 |
| 6 | human | 64900 | LPIN3 | lipin 3 | XM_011528998.3 | 88.5% | 89.4% | 2043_2287del;2362_2363ins77 |
| 7 | human | 64900 | LPIN3 | lipin 3 | XM_011528999.3 | 88.5% | 89.4% | 2043_2287del;2362_2363ins77 |
| 8 | human | 64900 | LPIN3 | lipin 3 | XM_011529000.2 | 88.3% | 89.3% | 556_557insGCA;2040_2284del;2359_2360ins77 |
| 9 | human | 64900 | LPIN3 | lipin 3 | XR_430311.1 | 87.7% | 1_156del;2273_2274ins77;2535_2536ins100 | |
| 10 | human | 64900 | LPIN3 | lipin 3 | XR_001754379.1 | 82.5% | 1_156del;2199_2443del;2958_3096del | |
| 11 | human | 64900 | LPIN3 | lipin 3 | XM_011529005.2 | 80.9% | 80.6% | (many diffs) |
| 12 | human | 64900 | LPIN3 | lipin 3 | XR_936610.2 | 79.9% | 1_156del;2199_2334del;2568_2569ins280 | |
| 13 | human | 64900 | LPIN3 | lipin 3 | XM_011529003.1 | 79.3% | 81.7% | 2043_2178del;2271_2272ins421 |
| 14 | human | 64900 | LPIN3 | lipin 3 | XM_011529004.1 | 78.8% | 79% | (many diffs) |
| 15 | human | 64900 | LPIN3 | lipin 3 | XR_001754380.1 | 78.7% | 1_156del;1777_1778insAGCGC;2292_2293ins415 | |
| 16 | human | 64900 | LPIN3 | lipin 3 | XM_011529002.3 | 74.3% | 75% | 0_1ins396;1647_1891del;1966_1967ins77 |
| 17 | human | 64900 | LPIN3 | lipin 3 | NR_126051.2 | 55.4% | (many diffs) | |
| 18 | human | 64900 | LPIN3 | lipin 3 | XM_005260516.2 | 54.5% | 53.1% | 1364_1365ins32;1395_1396ins1129 |
| 19 | human | 64900 | LPIN3 | lipin 3 | XM_006723863.2 | 54.1% | 53.9% | (many diffs) |
| 20 | human | 64900 | LPIN3 | lipin 3 | XM_011529006.2 | 54.1% | 53.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2625
- ORF length:
- 2556
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAACTACGTG GGGCAGCTGG CGGAGACGGT GTTTGGGACG GTGAAGGAGC 121 TGTACCGGGG CCTGAACCCA GCCACACTGA GCGGCGGCAT TGACGTGCTG GTGGTGAAGC 181 AGGTGGACGG CTCGTTCCGG TGCTCACCCT TCCACGTGCG TTTTGGCAAG CTGGGCGTCC 241 TGCGGTCGCG GGAGAAGGTG GTAGACATTG AGCTCAATGG GGAGCCTGTG GACTTGCACA 301 TGAAGCTTGG GGACAGCGGG GAGGCCTTCT TTGTTCAGGA GCTGGAGAGC GATGATGAAC 361 ATGTGCCTCC CGGCCTGTGC ACCTCACCCA TCCCTTGGGG GGGTCTGTCT GGCTTCCCCT 421 CGGACTCCCA GCTGGGCACT GCCAGTGAGC CTGAGGGCCT CGTCATGGCA GGCACGGCCT 481 CCACTGGGCG GAGGAAGAGG CGTCGCAGGA GGAAACCCAA GCAGAAAGAG GATGCAGTGG 541 CAACTGATTC TAGTCCAGAG GAACTGGAGG CAGGCGCTGA GAGTGAGCTA TCCCTGCCGG 601 AAAAGCTGAG GCCAGAGCCC CCAGGCAGTG TCCAGTTGGA AGAGAAGTCT TCACTGCAGC 661 CCAAAGACAT CTACCCCTAC TCGGATGGCG AGTGGCCCCC CCAGGCCAGC CTCTCAGCAG 721 GTGAGCTAAC ATCCCCTAAG AGCGACTCGG AGCTGGAGGT GCGGACCCCG GAGCCCAGTC 781 CCCTAAGAGC CGAGTCCCAC ATGCAGTGGG CCTGGGGGAG GCTGCCTAAG GTGGCCAGAG 841 CTGAGCGGCC CGAGTCCTCA GTGGTCCTTG AAGGCAGAGC TGGGGCAACC TCTCCTCCTC 901 GGGGAGGACC CAGCACTCCC TCTACCTCTG TGGCTGGCGG CGTGGACCCT TTGGGACTCC 961 CAATCCAGCA AACAGAGGCT GGTGCCGACC TTCAGCCTGA CACAGAGGAT CCCACTCTAG 1021 TGGGTCCCCC TCTCCACACC CCAGAGACAG AGGAAAGCAA GACTCAGAGC TCTGGGGACA 1081 TGGGCCTCCC TCCTGCCTCC AAGTCATGGA GCTGGGCCAC TCTGGAGGTT CCAGTTCCCA 1141 CCGGGCAGCC AGAGAGGGTC TCCAGGGGGA AAGGCTCCCC AAAGAGAAGC CAGCACCTGG 1201 GCCCCAGTGA CATCTACCTG GATGACTTGC CCTCCCTGGA CTCTGAGAAT GCAGCGCTTT 1261 ACTTCCCCCA AAGTGACTCT GGGCTGGGGG CCAGAAGATG GAGTGAACCC AGCAGTCAGA 1321 AGTCCCTGAG GGACCCCAAC CCTGAACATG AACCTGAACC CACTCTGGAC ACAGTGGATA 1381 CAATAGCACT GTCCCTCTGT GGTGGACTGG CTGACAGCCG GGACATCTCC CTAGAGAAAT 1441 TCAACCAGCA CAGCGTCTCT TACCAGGACC TCACCAAAAA CCCCGGACTT TTGGATGACC 1501 CAAACCTAGT GGTGAAAATC AATGGAAAGC ATTATAACTG GGCTGTGGCT GCCCCCATGA 1561 TCCTCTCCCT GCAAGCCTTC CAGAAAAACT TGCCCAAGAG CACCATGGAC AAGCTGGAGA 1621 GGGAGAAGAT GCCCCGGAAG GGTGGGCGAT GGTGGTTTTC CTGGCGACGC AGGGACTTCC 1681 TGGCCGAGGA GCGCAGTGCC CAGAAGGAGA AGACTGCAGC CAAGGAGCAG CAGGGGGAGA 1741 AGACAGAAGT CCTGAGCAGT GATGACGATG CCCCAGACAG CCCTGTGATC CTGGAGATCC 1801 CCTCCTTGCC ACCCTCCACT CCACCCTCCA CTCCTACCTA CAAGAAGTCC CTCCGCCTCT 1861 CCTCCGATCA GATCCGGCGC CTGAACCTGC AAGAAGGTGC CAATGATGTG GTCTTCAGCG 1921 TGACCACTCA GTACCAGGGC ACCTGCCGCT GCAAGGCCAC CATCTACCTG TGGAAATGGG 1981 ACGACAAGGT GGTCATCTCT GACATCGACG GCACCATCAC CAAGTCAGAT GCTCTGGGCC 2041 ATATCCTGCC CCAGCTGGGG AAAGACTGGA CACACCAGGG CATCACCAGT CTCTATCACA 2101 AAATCCAACT AAATGGGTAC AAGTTCCTGT ACTGCTCGGC GCGGGCCATT GGCATGGCGG 2161 ACCTCACCAA GGGGTACCTG CAGTGGGTGA GCGAGGGGGG CTGTAGCCTC CCCAAGGGCC 2221 CCATCCTTCT GTCTCCCAGC AGCCTCTTCT CTGCCCTCCA CAGAGAGGTG ATCGAGAAGA 2281 AACCAGAGGT GTTCAAGGTC GCCTGCCTGA GTGACATCCA GCAGCTGTTT CTGCCCCACG 2341 GACAGCCCTT CTATGCTGCC TTTGGGAATA GGCCCAATGA TGTCTTTGCC TACCGGCAGG 2401 TGGGCCTGCC TGAGTCACGC ATCTTCACAG TCAACCCCCG GGGAGAGCTC ATCCAGGAGC 2461 TCATAAAGAA CCACAAATCC ACGTATGAGC GGCTTGGTGA AGTGGTCGAG CTCCTCTTCC 2521 CACCTGTGGC CCGTGGCCCC AGCACAGACC TGGCCAACCC TGAATACAGT AACTTCTGCT 2581 ACTGGCGGGA GCCACTGCCT GCTGTGGACC TTGATACCCT GGACTTGCCA ACTTTCTTGT 2641 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c