Construct: ORF ccsbBroad304_12547

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013829.1_s304c1, BRDN0000398808
Derived from:
ccsbBroadEn_12547
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NDUFAF5 (79133)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12547
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352406.2 100% 100%
2 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352407.2 100% 100%
3 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352403.2 84% 84% 1_90del
4 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XM_006723624.2 84% 84% 1_90del
5 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XM_024451999.1 84% 84% 1_90del
6 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001039375.3 49.8% 49.8% 1_477del
7 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_024120.5 45.7% 45.7% 1_561del
8 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_937140.2 32.1% (many diffs)
9 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352408.1 16.6% 15.2% (many diffs)
10 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_430269.3 9.8% (many diffs)
11 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147980.2 8.7% 1_498del;713_810del;1071_5443del
12 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_001754396.1 8.6% 1_520del;735_832del;1093_5465del
13 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147978.2 8.6% 1_602del;758_813del;1133_5505del
14 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_029377.2 8.5% 1_602del;817_914del;1175_5547del
15 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147979.2 8.5% 1_622del;837_934del;1195_5567del
16 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147983.2 8.4% 1_652del;867_964del;1225_5597del
17 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147981.2 8.3% 1_736del;951_1048del;1309_5681del
18 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147982.2 8.2% (many diffs)
19 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_030252053.1 87.7% 90.5% (many diffs)
20 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_030252052.1 73.7% 76% (many diffs)
21 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_011239768.2 43.7% 45.1% (many diffs)
22 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... NM_027093.4 40.1% 41.4% (many diffs)
23 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XR_003953716.1 2.8% (many diffs)
24 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XR_003953715.1 2.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
540
ORF length:
474
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt tggaggcgac acactctatg aacttcggtg ttccttacag ttagcggaaa
121cggaaaggga aggaggattt tctccacaca tttctccttt cactgctgtc aatgacctgg
181gacatctgct tgggagagct ggctttaata ctctgactgt ggacactgat gaaattcaag
241ttaactatcc tggaatgttt gaattgatgg aagatttaca aggtatgggt gagagtaact
301gtgcttggaa tagaaaagcc ctgctgcatc gagacacaat gctggcagct gcggcagtgt
361acagagaaat gtacagaaat gaagatggtt cagtacctgc tacataccag atctattaca
421tgataggatg gaaatatcat gagtcacagg caagaccagc tgaaagaggt tccgcaactg
481tgtcatttgg agagctagga aaaataaaca accttatgcc accggggaaa aaatcacaat
541acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
601attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
661ggatta

Download FASTA (ORF) (Full)