Construct: ORF ccsbBroad304_12583

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017099.1_s304c1, BRDN0000407187
Derived from:
ccsbBroadEn_12583
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RHBDF2 (79651)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12583
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79651 RHBDF2 rhomboid 5 homolog 2 NM_001005498.3 74.8% 74.8% 1_624del
2 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_005257670.1 74.8% 74.8% 1_624del
3 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_011525249.2 74.8% 74.8% 1_624del
4 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_011525250.2 74.8% 74.8% 1_624del
5 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_011525251.2 74.8% 74.8% 1_624del
6 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_017025079.1 74.8% 74.8% 1_624del
7 human 79651 RHBDF2 rhomboid 5 homolog 2 NM_024599.5 72.3% 72.3% 1_711del
8 human 79651 RHBDF2 rhomboid 5 homolog 2 XM_005257669.3 72.3% 72.3% 1_711del
9 human 79651 RHBDF2 rhomboid 5 homolog 2 XR_001752625.2 50.6% 1_998del;1676_1745del;2926_3665del
10 mouse 217344 Rhbdf2 rhomboid 5 homolog 2 XM_017314494.1 85% 85.3% (many diffs)
11 mouse 217344 Rhbdf2 rhomboid 5 homolog 2 NM_001167680.1 66.1% 69.4% (many diffs)
12 mouse 217344 Rhbdf2 rhomboid 5 homolog 2 NM_172572.3 66.1% 69.4% (many diffs)
13 mouse 217344 Rhbdf2 rhomboid 5 homolog 2 XM_006533108.3 50.8% 45.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1923
ORF length:
1857
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tgtggcccac atgagcttgc aagctgccgc tgccctcctc aaggggcgct
121cggtgctgga tgccaccgga cagcggtgcc gggtggtcaa gcgcagcttt gccttcccga
181gcttcctgga ggaggatgtg gtcgatgggg cagacacgtt tgactcctcc ttttttagta
241aggaagaaat gagctccatg cctgatgatg tctttgagtc ccccccactc tctgccagct
301acttccgagg gatcccacac tcagcctccc ctgtctcccc cgatggggtg caaatccctc
361tgaaggagta tggccgagcc ccagtccccg ggccccggcg cggcaagcgc atcgcctcca
421aggtgaagca ctttgccttt gatcggaaga agcggcacta cggcctcggc gtggtgggca
481actggctgaa ccgcagctac cgccgcagca tcagcagcac tgtgcagcgg cagctggaga
541gcttcgacag ccaccggccc tacttcacct actggctgac cttcgtccat gtcatcatca
601cgctgctggt gatttgcacg tatggcatcg cacccgtggg ctttgcccag cacgtcacca
661cccagctggt gctgcggaac aaaggtgtgt acgagagcgt gaagtacatc cagcaggaga
721acttctgggt tggccccagc tcgattgacc tgatccacct gggggccaag ttctcaccct
781gcatccggaa ggacgggcag atcgagcagc tggtgctgcg cgagcgagac ctggagcggg
841actcaggctg ctgtgtccag aatgaccact ccggatgcat ccagacccag cggaaggact
901gctcggagac tttggccact tttgtcaagt ggcaggatga cactgggccc cccatggaca
961agtctgatct gggccagaag cggacttcgg gggctgtctg ccaccaggac cccaggacct
1021gcgaggagcc agcctccagc ggtgcccaca tctggcccga tgacatcact aagtggccga
1081tctgcacaga gcaggccagg agcaaccaca caggcttcct gcacatggac tgcgagatca
1141agggccgccc ctgctgcatc ggcaccaagg gcagctgtga gatcaccacc cgggaatact
1201gtgagttcat gcacggctat ttccatgagg aagcaacact ctgctcccag gtgcactgct
1261tggacaaggt gtgtgggctg ctgcccttcc tcaaccctga ggtcccagat cagttctaca
1321ggctctggct gtctctcttc ctacatgctg gcgtggtgca ctgcctcgtg tctgtggtct
1381ttcaaatgac catcctgagg gacctggaga agctggccgg ctggcaccgt atcgccatca
1441tcttcatcct cagtggcatc acaggcaacc tcgccagtgc catctttctc ccataccggg
1501cagaggtggg cccggccggc tcacagttcg gcctcctcgc ctgcctcttc gtggagctct
1561tccagagctg gccgctgctg gagaggccct ggaaggcctt cctcaacctc tcggccatcg
1621tgctcttcct gttcatctgt ggcctcctgc cctggatcga caacatcgcc cacatcttcg
1681gcttcctcag tggcctgctg ctggccttcg ccttcctgcc ctacatcacc ttcggcacca
1741gcgacaagta ccgcaagcgg gcactcatcc tggtgtcact gctggccttt gccggcctct
1801tcgccgccct cgtgctgtgg ctgtacatct accccattaa ctggccctgg atcgagcacc
1861tcacctgctt ccccttcacc agccgcttct gcgagaagta tgagctggac caggtgctgc
1921actgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1981tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2041tctggatta

Download FASTA (ORF) (Full)