Construct: ORF ccsbBroad304_12603

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017132.1_s304c1, BRDN0000401277
Derived from:
ccsbBroadEn_12603
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR59 (79726)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12603
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79726 WDR59 WD repeat domain 59 NM_001324171.1 100% 100%
2 human 79726 WDR59 WD repeat domain 59 NM_001324172.1 82.4% 79.3% (many diffs)
3 human 79726 WDR59 WD repeat domain 59 NM_030581.4 58.5% 58.6% 1713_2922delinsG
4 human 79726 WDR59 WD repeat domain 59 XM_005256146.3 57.4% 57.5% 1713_2979delinsG
5 human 79726 WDR59 WD repeat domain 59 XR_933430.2 48.6% 1_106del;1819_3518delinsG
6 human 79726 WDR59 WD repeat domain 59 XM_017023667.2 32.7% 32.7% 0_1ins756;957_2166delinsG
7 human 79726 WDR59 WD repeat domain 59 XM_017023668.2 32.7% 32.7% 0_1ins756;957_2166delinsG
8 human 79726 WDR59 WD repeat domain 59 XM_024450445.1 32% 32.1% 0_1ins756;957_2223delinsG
9 human 79726 WDR59 WD repeat domain 59 XM_017023669.1 26.5% 25.3% 0_1ins841;44_45ins80;792_2058delinsG
10 human 79726 WDR59 WD repeat domain 59 XM_024450446.1 26.5% 25.3% 0_1ins841;44_45ins80;792_2058delinsG
11 human 79726 WDR59 WD repeat domain 59 XM_011523332.2 24.1% 21.4% 0_1ins988;110_134del;750_2016delinsG
12 human 79726 WDR59 WD repeat domain 59 XM_017023670.1 24.1% 21.4% 0_1ins988;110_134del;750_2016delinsG
13 human 105371343 LOC105371343 uncharacterized LOC105371343 XR_933739.2 11.5% (many diffs)
14 mouse 319481 Wdr59 WD repeat domain 59 XM_011248402.1 66.9% 72.5% (many diffs)
15 mouse 319481 Wdr59 WD repeat domain 59 XM_006531083.1 51.7% 56% (many diffs)
16 mouse 319481 Wdr59 WD repeat domain 59 NM_001170742.1 51.6% 55.9% (many diffs)
17 mouse 319481 Wdr59 WD repeat domain 59 NM_176923.4 50.7% 54.9% (many diffs)
18 mouse 319481 Wdr59 WD repeat domain 59 XM_006531082.1 50.7% 54.9% (many diffs)
19 mouse 319481 Wdr59 WD repeat domain 59 NM_001170743.1 50.6% 54.8% (many diffs)
20 mouse 319481 Wdr59 WD repeat domain 59 XR_387752.1 31.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1779
ORF length:
1713
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcgcgatgg agcagcgaaa acgtggttgt agagttccgt gactcccagg
121caactgcgat gtctgtggac tgtcttgggc agcatgcagt gctttctggc cgcagattct
181tatacatcgt caatctagat gcccctttcg aaggtcaccg aaagatctct cgccagagca
241aatgggacat tggagctgtg cagtggaatc ctcatgacag ctttgcacac tattttgcgg
301cttcgagtaa ccaacgagta gacctttaca agtggaaaga cggcagtggg gaagttggca
361caaccttaca aggccacact cgtgtcatca gcgacttgga ctgggcggtg tttgagcctg
421acctcctggt taccagctct gtggacacct acatctacat ttgggatatc aaagacacaa
481ggaaacctac tgttgcactg tctgctgttg cgggtgcctc ccaggtcaaa tggaataaaa
541aaaatgctaa ctgccttgcc accagccatg acggcgatgt gcggatatgg gataagagga
601aacccagtac agcagtggaa tatctagccg cccacctctc caaaatccat ggcctggact
661ggcacccaga cagcgagcac attcttgcta cctccagtca agacaattct gtgaagttct
721gggattaccg ccagcctcgg aaatacctca atattcttcc ttgccaggtg cctgtctgga
781aggccagata cacacctttc agcaatggat tggtgactgt gatggttccc cagctgcgga
841gggaaaacag ccttctcctg tggaatgtct ttgacttgaa caccccagtc cacaccttcg
901tggggcatga tgatgtggtc ctggagttcc agtggaggaa gcagaaggaa gggtccaagg
961actatcaact ggtgacgtgg tcccgggatc agaccttgag aatgtggcgg gtggattccc
1021agatgcagag gctttgtgca aatgacatat tagatggtgt tgatgagttc attgagagta
1081tttcccttct gccggaacct gagaagaccc tgcacactga agatacagat caccagcaca
1141ctgcaagcca tggggaggaa gaagccctaa aagaagatcc ccctagaaat ctcctggaag
1201agaggaaatc agatcaactg gggctgcctc agaccttgca gcaggaattc tccctgatca
1261atgtgcaaat ccggaatgtc aatgtggaga tggatgcggc agacaggagc tgcacagtgt
1321ctgtgcactg cagcaaccat cgtgtcaaga tgctggtgaa gttccctgca cagtacccaa
1381acaacgccgc cccttccttc cagtttatta accccacaac catcacatcc accatgaaag
1441ctaagctgct gaagatcctg aaggacacag ccctgcagaa agtgaagcgt ggccagagct
1501gcctggagcc ctgcctgcgc cagctcgtct cctgccttga gtcctttgtg aaccaggaag
1561acagcgcttc cagcaacccg tttgcactcc ccaactctgt cactcccccc ttaccgacgt
1621ttgcgcgggt gaccacggct tacgggtcgt accaggacgc caacattccc tttcctagga
1681cttctggggc caggttctgc ggagcaggtt acctggtata tttcacaagg cccatgacaa
1741tgcatcgggc ggtgtctccc acagagccta ctccgaggtg cccaactttc ttgtacaaag
1801tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1861gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)