Construct: ORF ccsbBroad304_12631

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001480.1_s304c1, BRDN0000408953
Derived from:
ccsbBroadEn_12631
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGBL2 (79841)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12631
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520376.3 37.1% 37% 1_1443del;1605G>T;1642T>C
2 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520377.2 37.1% 37% 1_1443del;1605G>T;1642T>C
3 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520378.2 37.1% 37% 1_1443del;1605G>T;1642T>C
4 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520379.2 37.1% 37% 1_1443del;1605G>T;1642T>C
5 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520375.3 34.7% 34.6% 1_1602del;1764G>T;1801T>C
6 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_017018332.1 34.4% 34.3% 1_1623del;1785G>T;1822T>C
7 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520374.3 34.3% 34.2% 1_1629del;1791G>T;1828T>C
8 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_006718327.4 33.6% 33.5% 1_1683del;1845G>T;1882T>C
9 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253138.5 32.9% 32.8% 1_1737del;1899G>T;1936T>C
10 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520372.3 32.9% 32.8% 1_1737del;1899G>T;1936T>C
11 human 79841 AGBL2 ATP/GTP binding protein like 2 NM_024783.4 31.5% 31.4% 1_1851del;2013G>T;2050T>C
12 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520373.3 30.5% 29.3% (many diffs)
13 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_006718328.4 29.3% 29.3% (many diffs)
14 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253139.5 28.7% 28.7% (many diffs)
15 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_017018331.2 27.5% 26.6% (many diffs)
16 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253140.5 23.8% 23.8% (many diffs)
17 human 79841 AGBL2 ATP/GTP binding protein like 2 XR_242824.5 21.1% (many diffs)
18 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520381.3 20.5% 20.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
921
ORF length:
855
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtg gcggatggga atcctaaaca gctacaccat ggagtctacc tttggcgggt
121ccaccctggg taataaaaga gacacccact ttaccatcga agatctgaag tccttaggtt
181atcatgtctg tgacaccctt ctggactttt gtgatcctga ccaaattaag ttcactcagt
241gtctagcaga gcttaaggag cttctacgac aggaaatcca caagaaattc catgaacttg
301gacaagatgt agatttagaa ggaagttgga gtgacatctc tttgtctgac attgaatcca
361gcaccagtgg ctctgacagt tctctctcag atggtcttcc tgttcaccta gcaaacatag
421cagatgagct gactcagaaa aagaagatgt ttaagaagaa aaaaaagaag tcacttcaga
481ctaggaaaca gcgaaatgag cagtatcaga aaaaaaattt gatgcagaag ttaaagttaa
541cagaagatac ctcagaaaag gcaggatttg cttctactct gcaaaagcag ccaacctttt
601tcaaaaactc agagaattcc agttttttac caatgaaaaa tgaaaaccca aggttaaatg
661agacaaattt aaatagaaga gacaaagaca cccccctgga cccatcaatg gccaccctga
721ttctgcctaa gaataaaggg agaatgcaga ataagaagcc aggctttaca gtatcatgct
781ctccaaagag aaccataaac tccagccaag agccagctcc aggtatgaag ccaaactggc
841ctaggagcag atatcctgcc acaaagagag gctgtgctgc catggcggca tacccatcct
901tgcacatata cacatacccg tccccaactt tcttgtacaa agtggttggt aagcctatcc
961ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1021ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)