Construct: ORF ccsbBroad304_13512
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002766.1_s304c1, BRDN0000406777
- Derived from:
- ccsbBroadEn_13512
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KANSL1 (284058)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13512
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_017024489.1 | 54.8% | 54.4% | (many diffs) |
| 2 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_011524631.3 | 46.2% | 45.8% | (many diffs) |
| 3 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_017024488.2 | 46.2% | 45.8% | (many diffs) |
| 4 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_011524630.3 | 46.2% | 45.7% | (many diffs) |
| 5 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_011524629.3 | 44.9% | 44.6% | (many diffs) |
| 6 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | NM_001193465.1 | 43.6% | 43.2% | (many diffs) |
| 7 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_011524628.3 | 43.6% | 43.2% | (many diffs) |
| 8 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | NM_001193466.2 | 43.6% | 43.1% | (many diffs) |
| 9 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | NM_015443.3 | 43.6% | 43.1% | (many diffs) |
| 10 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_006721823.2 | 43.6% | 43.1% | (many diffs) |
| 11 | human | 284058 | KANSL1 | KAT8 regulatory NSL complex... | XM_006721824.4 | 43.6% | 43.1% | (many diffs) |
| 12 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534454.3 | 44% | 44.9% | (many diffs) |
| 13 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | NM_001081045.1 | 42.7% | 43.4% | (many diffs) |
| 14 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534453.3 | 42.7% | 43.4% | (many diffs) |
| 15 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_011249308.2 | 42.7% | 43.4% | (many diffs) |
| 16 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_017314831.1 | 42.7% | 43.4% | (many diffs) |
| 17 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534451.3 | 41.4% | 42.3% | (many diffs) |
| 18 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534452.3 | 41.4% | 42.3% | (many diffs) |
| 19 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534445.3 | 40.3% | 40.9% | (many diffs) |
| 20 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534446.3 | 40.3% | 40.9% | (many diffs) |
| 21 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534447.3 | 40.3% | 40.9% | (many diffs) |
| 22 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534448.3 | 40.3% | 40.9% | (many diffs) |
| 23 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534449.3 | 40.3% | 40.9% | (many diffs) |
| 24 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_006534450.3 | 40.3% | 40.9% | (many diffs) |
| 25 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_011249306.2 | 40.3% | 40.9% | (many diffs) |
| 26 | mouse | 76719 | Kansl1 | KAT8 regulatory NSL complex... | XM_011249307.2 | 40.3% | 40.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1515
- ORF length:
- 1449
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc tgcgatggcg cccgctctca ctgacgcagc agctgaagca caccatatcc 121 ggttcaaact ggctccccca tcctctacct tgtcccctgg cagtgccgaa aataacggca 181 acgccaacat ccttattgct gccaacggaa ccaaaagaaa agccattgct gcagaggatc 241 ccagcctaga tttccgaaat aatcctacca aggaagactt gggaaagctg caaccactgg 301 tggcatctta tctctgctct gatgtaacat ctgttccctc aaaggagtct ttgaagttgc 361 aaggggtctt cagcaagcag acagtcctta aatctcatcc tctcttatct cagtcctatg 421 aactccgagc tgagctgttg gggagacagc cagttttgga gttttcctta gaaaatctta 481 gaaccatgaa tacgagtggt cagacagctc tgccacaagc acctgtaaat gggttggcta 541 agaaattgac taaaagttca acacattctg atcatgacaa ttccacttcc ctcaatgggg 601 gaaaacgggc tctcacttca tctgctcttc atgggggtga aatgggagga tctgaatctg 661 gggacttgaa ggggggtatg accaattgca ctcttccaca tagaagcctt gatgtagaac 721 acacaacttt gtatagcaat aatagcactg caaacaaatc ctctgtcaat tccatggaac 781 agccggcact tcaaggaagc agtagattat cacctggtac agactccagc tctaacttgg 841 ggggtgtcaa attggagggt aaaaagtctc ccctgtcttc cattcttttc agtgctttag 901 attctgacac aaggataaca gctttactgc ggcgacaggc tgacattgag agccgtgccc 961 gcagattaca aaagcgctta caggttgtgc aagccaagca ggttgagagg catatacaac 1021 atcagctggg tggatttttg gagaagactt tgagcaaact gccaaacttg gaatccttga 1081 gaccacggag ccagttgatg ctgactcgaa aggctgaagc tgccttgaga aaagctgcca 1141 gtgagaccac cacttcagag ggacttagca actttctgaa aagcaattca atttcagaag 1201 aattggagag atttacagct agtggcatag ccaacttgag gtgcagtgaa caggcatttg 1261 attcagatgt cactgacagt agttcaggag gggagtctga tattgaagag gaagaactga 1321 ccagagctga tcccgagcag cgtcatgtac ccctgagacg caggtcagaa tggaaatggg 1381 ctgcagaccg ggcagctatt gtcagccgct ggaactggct tcaggctcat gtttctgact 1441 tggaatatcg aattcgtcag caaacagaca tttacaaaca gatacgtgct aataaggttt 1501 ctgtgtggag acagtaccca actttcttgt acaaagtggt tggtaagcct atccctaacc 1561 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 1621 cgacaatcaa cctctggatt a