Construct: ORF ccsbBroad304_13576

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004722.1_s304c1, BRDN0000411389
Derived from:
ccsbBroadEn_13576
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBAC2 (337867)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13576
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 337867 UBAC2 UBA domain containing 2 XM_017020553.1 90.2% 90.2% 1_51del
2 human 337867 UBAC2 UBA domain containing 2 XM_006719948.3 67.9% 67.9% 1_222del
3 human 337867 UBAC2 UBA domain containing 2 XM_011521083.2 53.7% 53.7% 1_405del
4 human 337867 UBAC2 UBA domain containing 2 NM_177967.4 50.8% 50.8% 1_456del
5 human 337867 UBAC2 UBA domain containing 2 XM_011521082.2 49.5% 49.5% 1_480del
6 human 337867 UBAC2 UBA domain containing 2 NM_001144072.2 45.6% 45.6% 1_561del
7 human 337867 UBAC2 UBA domain containing 2 NR_026644.2 16.3% 1_1244del;1716_2887del
8 mouse 68889 Ubac2 ubiquitin associated domain... XM_006519493.3 82.9% 83.3% (many diffs)
9 mouse 68889 Ubac2 ubiquitin associated domain... XM_006519492.2 40.8% 41% (many diffs)
10 mouse 68889 Ubac2 ubiquitin associated domain... NM_026861.2 38.9% 39.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
537
ORF length:
471
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc cggtctgtgc tacgacagca aaatgttcca ggtgcatcag gtgctctgca
121tccccagctg gatggcaaaa ttcttttctt ggacacttga acccatcttc tcttcttcag
181aacccaccag cgaagccaga attgggatgg gagccacgct ggacatccag agacagcaga
241gaatggagct gctggaccgg cagctgatgt tctctcagtt tgcacaaggg aggcgacaga
301gacagcagca gggaggaatg atcaattgga atcgtctttt tcctccttta cgtcagcgac
361aaaacgtaaa ctatcagggc ggtcggcagt ctgagccagc agcgccccct ctagaagttt
421ctgaggaaca ggtcgcccgg ctcatggaga tgggattttc cagaggtgat gctttggaag
481ccctgagagc ttcaaacaat gacctcaatg tcgccaccaa cttcctgctg cagcactgcc
541caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
601ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
661tta

Download FASTA (ORF) (Full)