Construct: ORF ccsbBroad304_13817

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005259.1_s304c1, BRDN0000401968
Derived from:
ccsbBroadEn_13817
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP2B3 (492)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13817
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 492 ATP2B3 ATPase plasma membrane Ca2+... NM_021949.3 74.4% 74.4% (many diffs)
2 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_005274692.3 74.4% 74.4% (many diffs)
3 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_024452386.1 73.2% 73.2% (many diffs)
4 human 492 ATP2B3 ATPase plasma membrane Ca2+... NM_001001344.2 71.5% 71.5% (many diffs)
5 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_005274690.3 71.5% 71.5% (many diffs)
6 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_005274691.3 70.4% 70.4% (many diffs)
7 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_005274689.3 69.8% 69.8% (many diffs)
8 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_011531174.2 69.1% 69.1% (many diffs)
9 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_017029553.1 68.5% 68.5% (many diffs)
10 human 492 ATP2B3 ATPase plasma membrane Ca2+... XM_011531177.2 68% 68% (many diffs)
11 human 492 ATP2B3 ATPase plasma membrane Ca2+... XR_001755693.2 21.8% (many diffs)
12 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_006528086.2 68.9% 76.2% (many diffs)
13 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... NM_001310537.1 67.8% 75% (many diffs)
14 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_006528084.3 66.2% 73.2% (many diffs)
15 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247614.2 65.1% 72.2% (many diffs)
16 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... NM_177236.4 63.6% 70.4% (many diffs)
17 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247613.1 62.6% 69.4% (many diffs)
18 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_006528081.2 62.1% 68.7% (many diffs)
19 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247609.2 62.1% 68.7% (many diffs)
20 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247610.1 62.1% 68.7% (many diffs)
21 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247611.2 62.1% 68.7% (many diffs)
22 mouse 320707 Atp2b3 ATPase, Ca++ transporting, ... XM_011247612.1 61.1% 67.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2691
ORF length:
2622
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggcgacatg gccaatagtt ccatcgagtt ccaccccaag ccccagcagc
121agcgggatgt cccccaggct ggaggctttg ggtgcacgct ggcggagctg cgcaccctca
181tggagctgcg aggggccgag gcgctgcaga agatcgagga ggcctacggg gatgtcagcg
241ggctctgccg gaggctgaag acctcaccca cagagggcct ggcggacaac accaatgacc
301tggagaagcg caggcagatc tacgggcaga acttcatccc cccaaagcaa cccaagacct
361tcctgcagct ggtgtgggag gccctgcagg acgtgaccct catcatcctg gaggtggctg
421ccatcgtctc tctgggcctc tcgttctatg cgccgccagg agaggagagt gaagcctgtg
481ggaatgtgtc gggaggcgca gaagatgagg gcgaggccga agctggctgg atcgaggggg
541ctgccatcct gctgtccgtc atctgtgtgg tgctggtcac ggccttcaat gactggagca
601aggagaagca gttccgaggc ctgcagagcc gaattgagca ggagcagaag ttcacggtca
661tccggaacgg gcagctcctc caggtccccg tggctgcgct ggtggtgggg gacattgccc
721aggtcaagta cggcgacctg ctgccagccg acggcgtgct catccaggcc aatgacctca
781agatcgacga gagctccctg acgggcgagt ctgaccacgt gcgcaagtca gctgacaaag
841atcccatgct gctctcaggc actcatgtca tggaaggttc tggaagaatg gtggtgaccg
901ccgttggcgt gaattcccag acaggcatca tcttcacgct gcttggagct ggcggagagg
961aggaagagaa gaaagataag aaaggcaagc agcaggatgg ggccatggag agtagccaga
1021ccaaagctaa gaagcaggat ggtgcagtgg ccatggagat gcagcccctg aagagcgcgg
1081agggtgggga gatggaggag cgggagaaga agaaagccaa cgcacccaaa aaggagaagt
1141ctgtccttca ggggaagctc acaaagctag ccgtgcagat cgggaaagca gggctggtga
1201tgtctgccat caccgtcatc atcctggtcc tctactttgt gattgagacg tttgtcgtgg
1261aaggccggac atggctggca gagtgcacgc cggtctatgt acaatacttc gtgaagttct
1321tcatcattgg tgtcactgtg ctggtcgtgg ctgtcccaga gggcctgcct cttgctgtca
1381ccatctcctt agcttactct gtcaagaaaa tgatgaaaga caacaacctg gtgcgccacc
1441tggatgcctg cgagaccatg ggcaacgcca cagccatctg ctccgacaag acgggcacgc
1501tcaccaccaa ccgtatgacc gtggtccagt cctacctagg ggacacccac tacaaagaga
1561ttccggcccc cagcgccctg acccctaaga tcctcgacct cctggtccat gccatctcca
1621tcaacagtgc ctataccacc aaaatactac ctcctgagaa ggaaggcgcc ctcccacgcc
1681aggtgggcaa taagacggag tgcgccctgc tgggcttcgt cttggacctg aagcgggact
1741tccagcccgt gcgcgagcag atcccggaag acaagcttta caaagtgtac accttcaact
1801cggtccgcaa gtccatgagc acagtcatcc gcatgcccga cggtggcttc cgcctcttca
1861gcaagggggc ctcagagatc ctcttgaaaa agtgcaccaa catcttgaac agcaatggcg
1921aactccgggg ctttcggcct cgggaccggg acgacatggt gaggaagatc atcgagccga
1981tggcttgcga tggcctccgc accatctgca tcgcctaccg ggacttctct gcaggccagg
2041agcccgactg ggacaacgag aatgaggtcg tgggtgacct cacctgcata gctgtcgtgg
2101gcattgagga ccctgtgcgg cccgaggtcc ctgaagctat ccgaaaatgc cagcgtgctg
2161gcatcacagt ccgcatggtg actggggaca acatcaacac ggcccgggcc atcgcagcca
2221aatgcggcat catccagccc ggggaggact tcctgtgcct agaagggaag gagttcaacc
2281ggcggatccg caatgagaaa ggcgagatag aacaggagcg gctggacaag gtgtggccca
2341agctgagggt gctggcccgg tcgtctccca ccgacaagca cacactggtc aaagggatta
2401tcgacagcac cactggtgag cagcggcagg tggtggctgt gacaggggat ggcaccaacg
2461atgggccggc cctcaagaag gcggacgtgg gcttcgccat gggcatcgca gggaccgaca
2521tggccaagga ggcctccgac atcatcctga ccgatgacaa cttcaccagc atcgtcaagg
2581cagtcatgtg gggccgtaac gtctatgaca gcatctccaa gttcctgcag tttcaactga
2641cggtcaatgt ggtggctgtc atcgtggcct tcacaggtgc ctgcattact ttgccaactt
2701tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
2761agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)