Construct: ORF ccsbBroad304_13977

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014212.1_s304c1, BRDN0000410633
Derived from:
ccsbBroadEn_13977
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
UBE2D3 (7323)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13977
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_003340.6 99.3% 7delC;357A>G;367A>C
2 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181886.3 99.3% 7delC;357A>G;367A>C
3 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181887.2 99.3% 7delC;357A>G;367A>C
4 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181888.3 99.3% 7delC;357A>G;367A>C
5 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181889.2 99.3% 7delC;357A>G;367A>C
6 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181890.2 99.3% 7delC;357A>G;367A>C
7 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181891.3 99.3% 7delC;357A>G;367A>C
8 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_024454202.1 99.3% 7delC;357A>G;367A>C
9 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181893.2 95.7% (many diffs)
10 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181892.3 95.7% (many diffs)
11 human 7322 UBE2D2 ubiquitin conjugating enzym... NM_003339.3 85.9% (many diffs)
12 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_001300795.1 80% 0_1ins86;270A>G;280A>C
13 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_017008584.2 80% 0_1ins86;270A>G;280A>C
14 human 7322 UBE2D2 ubiquitin conjugating enzym... XM_017009820.1 73.4% (many diffs)
15 human 7322 UBE2D2 ubiquitin conjugating enzym... NM_181838.1 70.4% (many diffs)
16 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... NM_025356.4 97.7% (many diffs)
17 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501873.2 97.7% (many diffs)
18 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501874.2 97.7% (many diffs)
19 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501875.2 97.7% (many diffs)
20 mouse 56550 Ube2d2a ubiquitin-conjugating enzym... NM_019912.2 85% (many diffs)
21 mouse 56550 Ube2d2a ubiquitin-conjugating enzym... XM_006526120.2 70.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
72
ORF length:
6
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gtgaaacgga ttaataagga acttagtgat ttggcccgtg accctccagc
121acaatgttct gcaggtccag ttggggatga tatgtttcat tggcaagcca caattatggg
181acctaatgac agcccatatc aaggcggtgt attctttttg acaattcatt ttcctacaga
241ctaccccttc aaaccaccta aggttgcatt tacaacaaga atttatcatc caaatattaa
301cagtaatggc agcatttgtc tcgatattct aagatcacag tggtcgcctg ctttaacaat
361ttctaaagtt cttttatcca tttgttcact gctatgtgat ccaaacccag atgaccccct
421ggtgccagag cttgcacgga tctataaaac agacagagat aagtacaaca gaatatctcg
481ggaatggact cagaagtatg ccatgtgccc aactttcttg tacaaagtgg ttggtaagcc
541tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg
601gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)