Construct: ORF ccsbBroad304_14413

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009612.1_s304c1, BRDN0000400732
Derived from:
ccsbBroadEn_14413
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLVS1 (157807)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14413
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 157807 CLVS1 clavesin 1 NM_173519.3 99.9% 99.1% 1055delC
2 human 157807 CLVS1 clavesin 1 XM_017013141.2 99.9% 99.1% 1055delC
3 human 157807 CLVS1 clavesin 1 XM_017013142.2 99.9% 99.1% 1055delC
4 human 157807 CLVS1 clavesin 1 XM_024447079.1 99.9% 99.1% 1055delC
5 mouse 74438 Clvs1 clavesin 1 NM_028940.2 89.4% 96.3% (many diffs)
6 mouse 74438 Clvs1 clavesin 1 XM_011250125.2 89.4% 96.3% (many diffs)
7 mouse 74438 Clvs1 clavesin 1 XM_006538321.3 64% 51.6% (many diffs)
8 mouse 74438 Clvs1 clavesin 1 XM_006538322.3 51.5% 55.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1128
ORF length:
1062
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg accagtctct cttcttccaa aatatcagaa gttaaacact tggaacggag
121atttggccaa gatgacccat ttacaggctg gactcagtcc agagactata gagaaagctc
181gcctggaact gaatgaaaac cccgatgttt tacatcagga tattcagcaa gtcagggaca
241tgatcatcac caggcctgac attggatttt tacgtacaga tgatgccttc atcctgagat
301ttctccgagc caggaagttt caccaagcgg atgcctttag actcctggct cagtatttcc
361agtaccgcca gctaaacctg gacatgttca aaaacttcaa ggcagatgat cccggcatta
421agagggctct gatcgatggg ttccccgggg tgctggaaaa ccgagaccat tacggcagga
481agattctttt gctgtttgca gccaattggg atcagagtag gaactccttc acagacatcc
541ttcgtgccat cctgctgtca ttggaagtcc taatcgaaga tccggagctt cagataaatg
601gcttcatttt aattatagac tggagtaatt tttccttcaa acaagcctcc aaactgacac
661cttcaatcct taaactggcc attgaagggt tgcaggacag ctttcctgcc cgctttggag
721gagtccactt tgtcaaccag ccctggtaca ttcatgccct ctacacactc atcaagccat
781ttcttaaaga caagaccagg aaacggattt tcctgcatgg aaacaattta aacagccttc
841accagctaat acaccctgaa tttttgccct ctgaatttgg aggaactctt cctccttatg
901acatgggaac ttgggcccgg acgttactcg gtcccgacta cagcgatgaa aatgactata
961ctcacacatc ctataatgca atgcacgtga agcatacgtc ctcgaatctg gagagagaat
1021gctcacccaa gctgatgaaa agatctcagt ctgtggtaga agctgggacc ctgaaacatg
1081aggagaaggg agagaatgag aacacccagc cactcctggt ctggactgcc caactttctt
1141gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt ctacgtagta
1201atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)