Construct: ORF ccsbBroad304_14599
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018791.1_s304c1, BRDN0000459276
- Derived from:
- ccsbBroadEn_14599
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CSNK1A1 (1452)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14599
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 99.5% | 22.5% | 226_226delAinsCAN;229_230delCGinsNN |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 95.3% | 23.3% | (many diffs) |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 91.8% | 20.8% | 226_226delAinsCAN;229_230delCGinsNN;455_538del |
| 4 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 90.9% | 18.6% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 67.8% | 6% | 0_1ins269;188_271del |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 94.4% | 22.5% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 90.3% | 23.3% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 87.2% | 20.8% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 86.9% | 20.8% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 85% | 20.3% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 84.9% | 20.3% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 84.6% | 20.9% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 83.4% | 21.5% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.8% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 13.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 333
- ORF length:
- 264
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcgagtagc agcggctcca aggctgaatt cattgtcgga gggaaatata 121 aactggtacg gaagatcggg tctggctcct tcggggacat ctatttggcg atcaacatca 181 ccaacggcga ggaagtggca gtgaagctag aatctcagaa ggccaggcat ccccagttgc 241 tgtacgagag caagctctat aagattcttc aaggtggggt tggcatcccc caccantann 301 gtggtatggt caggaaaaag actacaatgt actagtcatg gatcttctgg gacctagcct 361 cgaagacctc ttcaatttct gttcaagaag gttcacaatg aaaactgTAC TTATGTTAGC 421 TGACCAGATG ATCAGTAGAA TTGAATATGT GCATACAAAG AATTTTATAC ACAGAGACAT 481 TAAACCAGAT AACTTCCTAA TGGGTATTGG GCGTCACTGT AATAAGTTAT TCCTTATTGA 541 TTTTGGTTTG GCCAAAAAGT ACAGAGACAA CAGGACAAGG CAACACATAC CATACAGAGA 601 AGATAAAAAC CTCACTGGCA CTGCCCGATA TGCTAGCATC AATGCACATC TTGGTATTGA 661 GCAGAGTCGC CGAGATGACA TGGAATCATT AGGATATGTT TTGATGTATT TTAATAGAAC 721 CAGCCTGCCA TGGCAAGGGC TAAAGGCTGC AACAAAGAAA CAAAAATATG AAAAGATTAG 781 TGAAAAGAAG ATGTCCACGC CTGTTGAAGT TTTATGTAAG GGGTTTCCTG CAGAATTTGC 841 GATGTACTTA AACTATTGTC GTGGGCTACG CTTTGAGGAA GCCCCAGATT ACATGTATCT 901 GAGGCAGCTA TTCCGCATTC TTTTCAGGAC CCTGAACCAT CAATATGACT ACACATTTGA 961 TTGGACAATG TTAAAGCAGA AAGCAGCACA GCAGGCAGCC TCTTCCAGTG GGCAGGGTCA 1021 GCAGGCCCAA ACCCCCACAG GCAAGCAAAC TGACAAAACC AAGAGTAACA TGAAAGGTTT 1081 CTTGCCAACT TTCTTGTACa aagtggttgg taagcctatc cctaaccctc tcctcggtct 1141 cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga caatcaacct 1201 ctggatta