Construct: ORF ccsbBroad304_14734

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019006.1_s304c1, BRDN0000459807
Derived from:
ccsbBroadEn_14734
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDGFRA (5156)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14734
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5156 PDGFRA platelet derived growth fac... NM_001347829.2 99.9% 100% 3222T>C
2 human 5156 PDGFRA platelet derived growth fac... NM_006206.6 99.9% 100% 3222T>C
3 human 5156 PDGFRA platelet derived growth fac... XM_005265743.1 99.9% 100% 3222T>C
4 human 5156 PDGFRA platelet derived growth fac... NM_006206.4:c.2522_2527del 99.7% 99.8% 2519_2520insCAGAGA;3216T>C
5 human 5156 PDGFRA platelet derived growth fac... NM_006206.4:c.2526_2537del 99.6% 99.6% 2523_2524insGACATCATGCAT;3210T>C
6 human 5156 PDGFRA platelet derived growth fac... NM_001347830.1 98.7% 98.8% 1_39del;3261T>C
7 human 5156 PDGFRA platelet derived growth fac... NM_001347828.2 97.7% 97.7% 1_75del;3297T>C
8 human 5156 PDGFRA platelet derived growth fac... NM_001347827.2 73.2% 70.9% (many diffs)
9 human 5156 PDGFRA platelet derived growth fac... XM_017008281.1 72.3% 70.1% (many diffs)
10 human 5156 PDGFRA platelet derived growth fac... XM_006714041.3 71.5% 69.3% (many diffs)
11 mouse 18595 Pdgfra platelet derived growth fac... NM_001083316.2 86.4% 91.8% (many diffs)
12 mouse 18595 Pdgfra platelet derived growth fac... NM_011058.3 86.4% 91.8% (many diffs)
13 mouse 18595 Pdgfra platelet derived growth fac... XM_006504261.3 86.4% 91.8% (many diffs)
14 mouse 18595 Pdgfra platelet derived growth fac... XM_006504262.3 86.4% 91.8% (many diffs)
15 mouse 18595 Pdgfra platelet derived growth fac... XM_006504263.3 86.4% 91.8% (many diffs)
16 mouse 18595 Pdgfra platelet derived growth fac... NM_001347718.1 61% 63.2% (many diffs)
17 mouse 18595 Pdgfra platelet derived growth fac... NM_001347719.1 61% 63.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3336
ORF length:
3267
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggggacttcc catccggcgt tcctggtctt aggctgtctt ctcacagggc
121tgagcctaat cctctgccag ctttcattac cctctatcct tccaaatgaa aatgaaaagg
181ttgtgcagct gaattcatcc ttttctctga gatgctttgg ggagagtgaa gtgagctggc
241agtaccccat gtctgaagaa gagagctccg atgtggaaat cagaaatgaa gaaaacaaca
301gcggcctttt tgtgacggtc ttggaagtga gcagtgcctc ggcggcccac acagggttgt
361acacttgcta ttacaaccac actcagacag aagagaatga gcttgaaggc aggcacattt
421acatctatgt gccagaccca gatgtagcct ttgtacctct aggaatgacg gattatttag
481tcatcgtgga ggatgatgat tctgccatta taccttgtcg cacaactgat cccgagactc
541ctgtaacctt acacaacagt gagggggtgg tacctgcctc ctacgacagc agacagggct
601ttaatgggac cttcactgta gggccctata tctgtgaggc caccgtcaaa ggaaagaagt
661tccagaccat cccatttaat gtttatgctt taaaagcaac atcagagctg gatctagaaa
721tggaagctct taaaaccgtg tataagtcag gggaaacgat tgtggtcacc tgtgctgttt
781ttaacaatga ggtggttgac cttcaatgga cttaccctgg agaagtgaaa ggcaaaggca
841tcacaatgct ggaagaaatc aaagtcccat ccatcaaatt ggtgtacact ttgacggtcc
901ccgaggccac ggtgaaagac agtggagatt acgaatgtgc tgcccgccag gctaccaggg
961aggtcaaaga aatgaagaaa gtcactattt ctgtccatga gaaaggtttc attgaaatca
1021aacccacctt cagccagttg gaagctgtca acctgcatga agtcaaacat tttgttgtag
1081aggtgcgggc ctacccacct cccaggatat cctggctgaa aaacaatctg actctgattg
1141aaaatctcac tgagatcacc actgatgtgg aaaagattca ggaaataagg tatcgaagca
1201aattaaagct gatccgtgct aaggaagaag acagtggcca ttatactatt gtagctcaaa
1261atgaagatgc tgtgaagagc tatacttttg aactgttaac tcaagttcct tcatccattc
1321tggacttggt cgatgatcac catggctcaa ctgggggaca gacggtgagg tgcacagctg
1381aaggcacgcc gcttcctgat attgagtgga tgatatgcaa agatattaag aaatgtaata
1441atgaaacttc ctggactatt ttggccaaca atgtctcaaa catcatcacg gagatccact
1501cccgagacag gagtaccgtg gagggccgtg tgactttcgc caaagtggag gagaccatcg
1561ccgtgcgatg cctggctaag aatctccttg gagctgagaa ccgagagctg aagctggtgg
1621ctcccaccct gcgttctgaa ctcacggtgg ctgctgcagt cctggtgctg ttggtgattg
1681tgatcatctc acttattgtc ctggttgtca tttggaaaca gaaaccgagg tatgaaattc
1741gctggagggt cattgaatca atcagcccag atggacatga atatatttat gtggacccga
1801tgcagctgcc ttatgactca agatgggagt ttccaagaga tggactagtg cttggtcggg
1861tcttggggtc tggagcgttt gggaaggtgg ttgaaggaac agcctatgga ttaagccggt
1921cccaacctgt catgaaagtt gcagtgaaga tgctaaaacc cacggccaga tccagtgaaa
1981aacaagctct catgtctgaa ctgaagataa tgactcacct ggggccacat ttgaacattg
2041taaacttgct gggagcctgc accaagtcag gccccattta catcatcaca gagtattgct
2101tctatggaga tttggtcaac tatttgcata agaataggga tagcttcctg agccaccacc
2161cagagaagcc aaagaaagag ctggatatct ttggattgaa ccctgctgat gaaagcacac
2221ggagctatgt tattttatct tttgaaaaca atggtgacta catggacatg aagcaggctg
2281atactacaca gtatgtcccc atgctagaaa ggaaagaggt ttctaaatat tccgacatcc
2341agagatcact ctatgatcgt ccagcctcat ataagaagaa atctatgtta gactcagaag
2401tcaaaaacct cctttcagat gataactcag aaggccttac tttattggat ttgttgagct
2461tcacctatca agttgcccga ggaatggagt ttttggcttc aaaaaattgt gtccaccgtg
2521atctggctgc tcgcaacgtc ctcctggcac aaggaaaaat tgtgaagatc tgtgactttg
2581gcctggccag agacatcatg catgattcga actatgtgtc gaaaggcagt acctttctgc
2641ccgtgaagtg gatggctcct gagagcatct ttgacaacct ctacaccaca ctgagtgatg
2701tctggtctta tggcattctg ctctgggaga tcttttccct tggtggcacc ccttaccccg
2761gcatgatggt ggattctact ttctacaata agatcaagag tgggtaccgg atggccaagc
2821ctgaccacgc taccagtgaa gtctacgaga tcatggtgaa atgctggaac agtgagccgg
2881agaagagacc ctccttttac cacctgagtg agattgtgga gaatctgctg cctggacaat
2941ataaaaagag ttatgaaaaa attcacctgg acttcctgaa gagtgaccat cctgctgtgg
3001cacgcatgcg tgtggactca gacaatgcat acattggtgt cacctacaaa aacgaggaag
3061acaagctgaa ggactgggag ggtggtctgg atgagcagag actgagcgct gacagtggct
3121acatcattcc tctgcctgac attgaccctg tccctgagga ggaggacctg ggcaagagga
3181acagacacag ctcgcagacc tctgaagaga gtgccattga gacgggttcc agcagttcca
3241ccttcatcaa gagagaggac gagaccattg aagacatcga catgatggac gacatcggca
3301tagactcttc agacctggtg gaagacagct tcctgttgcc aactttcttg tacaaagtgg
3361ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
3421ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.