Construct: ORF ccsbBroad304_15028

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018926.1_s304c1, BRDN0000459410
Derived from:
ccsbBroadEn_15028
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PRKD2 (25865)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15028
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25865 PRKD2 protein kinase D2 NM_001079880.1 99.6% 29.6% (many diffs)
2 human 25865 PRKD2 protein kinase D2 NM_001079881.1 99.6% 29.6% (many diffs)
3 human 25865 PRKD2 protein kinase D2 NM_016457.4 99.6% 29.6% (many diffs)
4 human 25865 PRKD2 protein kinase D2 NM_001079882.1 81.7% 12.4% (many diffs)
5 human 25865 PRKD2 protein kinase D2 XM_005258716.2 81.7% 12.4% (many diffs)
6 mouse 101540 Prkd2 protein kinase D2 NM_001252458.1 87.8% 28.6% (many diffs)
7 mouse 101540 Prkd2 protein kinase D2 NM_178900.4 87.8% 28.6% (many diffs)
8 mouse 101540 Prkd2 protein kinase D2 XR_391036.1 60.2% (many diffs)
9 mouse 101540 Prkd2 protein kinase D2 XM_006539444.1 55.2% 11.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1209
ORF length:
1140
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggccaccgcc ccctcttatc ccgccgggct ccctggctct cccgggccgg
121ggtctcctcc gccccccggc ggcctagagc tgcagtcgcc gccaccgcta ctgccccaga
181tcccggcccc gggttccggg gtctcctttc acatccagat cgggctgacc cgcgagttcg
241tgctgttgcc cgccgcctcc gagctggctc atgtgaagca gctggcctgt tccatcgtgg
301accagaagtt ccctgagtgt ggcttctacg gcctttacga caagatcctg cttttcaaac
361atgaccccac gtcggccaac ctcctgcagc tggtgcgctc gtccggagac atccaggagg
421gcgacctggt ggaggtggtg ctgtcggcct cggccacctt cgaggacttc cagatccgcc
481cgcacgccct cacggtgcac tcctatcggg cgcctgcctt ctgtgatcac tgcggggaga
541tgctcttcgg cctagtgcgc cagggcctca agtgcgatgg ctgcgggctg aactaccaca
601agcgctgtgc cttcagcatc cccaacaact gtagtggggc ccgcaaacgg cgcctgtcat
661ccacgtctct ggccagtggc cactcggtgc gcctcggcac ctccgagtcc ctgccctgca
721cggctgaaga gctgagccgt agcaccaccg aactcctgcc tcgccgtccc ccgtcatcct
781cttcctcctc ttctgcctca tcgtatacgg gccgccccat tgagctggac agatgctgct
841ccccaaggtc aaggtgccgc acaccttcct catccacagc tatacacggc ccaccgtttg
901ccaggcttgc aagaaactcc tcaagggcct cttccggcag ggcctgcaat gcaaagactg
961caagtttaac tgtcacaaac gctgcgccac ccgcgtccct aatgactgcc tgggggaggc
1021ccttatcaat ggagatgtgc cgatggagga ggccaccgat ttcagcgagg ctgacaagag
1081cgccctcatg gatgagtcag aggactccgg tgtcatccct ggctcccact cagagaatgc
1141gctccacgcc agtgaggagg aggaaggcga gggaggcaag gcccagagct ccctggggta
1201catcccccta atgagggtgg tgcaatcggt gcgacacacg acgcggaaat ccagcaccac
1261gctgcgggag ggttgggtgg ttcattacag caacaaggac acgctgagaa agcggcacta
1321ttggcgcctg gactgcaagt gtatcacgct cttccagaac aacacgacca acagatacta
1381taaggaaatt ccgctgtcag aaatcctcac ggtggagtcc gcccagaact tcagccttgt
1441gccgccgggc accaacccac actgctttga gatcgtcact gccaatgcca cctacttcgt
1501gggcgagatg cctggcggga ctccgggtgg gccaagtggg cagggggctg aggccgcccg
1561gggctgggag acagccatcc gccaggccct gatgcccgtc atccttcagg acgcacccag
1621cgccccaggc cacgcgcccc acagacaagc ttctctgagc atctctgtgt ccaacagtca
1681gatccaagag aatgtggaca ttgccactgt ctaccagatc ttccctgacg aagtgctggg
1741ctcagggcag tttggagtgg tctatggagg aaaacaccgg aagacaggcc gggacgtggc
1801agttaaggtc attgacaaac tgcgcttccc taccaagcag gagagccagc tccggaatga
1861agtggccatt ctgcagagcc tgcggcatcc cgggatcgtg aacctggagt gcatgttcga
1921gacgcctgag aaagtgtttg tgtggatgag aaagctgcat gggggacagg tgggagatga
1981tcctgtccag tgagaagggc cggctgcctg agcgcctcac caagttcctc atcacccaga
2041tcctggtggc ttngagacac cttcacttca agaacattgt ccactgtgac ttgaaaccag
2101aaaacgtgtt gctggcatca gcagacccat ttcctcaggt gaagctgtgt gactttggct
2161ttgctcgcat catcggcgag aagtcgttcc gccgctcagt ggtgggcacg ccggcctacc
2221tggcacccga ggtgctgctc aaccagggct acaaccgctc gctggacatg tggtcagtgg
2281gcgtgatcat gtacgtcagc ctcagcggca ccttcccttt caacgaggat gaggacatca
2341atgaccagat ccagaacgcc gccttcatgt acccggccag cccctggagc cacatctcag
2401ctggagccat tgacctcatc aacaacctgc tgcaggtgaa gatgcgcaaa cgctacagcg
2461tggacaaatc tctcagccac ccctggttac aggagtacca gacgtggctg gacctccgag
2521agctggaggg gaagatggga gagcgataca tcacgcatga gagtgacgac gcgcgctggg
2581agcagtttgc agcagagcat ccgctgcctg ggtctgggct gcccacggac agggatctcg
2641gtggggcctg tccaccacag gaccacgaca tgcaggggct ggcggagcgc atcagtgttc
2701tcttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2761tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2821tctggatta

Download FASTA (ORF) (Full)