Construct: ORF ccsbBroad304_15035
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009938.1_s304c1, BRDN0000461941
- Derived from:
- ccsbBroadEn_15035
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CNNM1 (26507)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15035
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | NM_020348.3 | 61.3% | 55% | (many diffs) |
| 2 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | NM_001345887.1 | 59.9% | 53.9% | (many diffs) |
| 3 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | NM_001345888.1 | 56.4% | 53% | 1_1095del;1284T>G;2525_2526ins145 |
| 4 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | NM_001345889.1 | 55.2% | 51.8% | (many diffs) |
| 5 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | XM_011539631.3 | 49.3% | 52.2% | (many diffs) |
| 6 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | XR_945667.2 | 48.3% | (many diffs) | |
| 7 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | NR_144311.1 | 29.3% | (many diffs) | |
| 8 | human | 26507 | CNNM1 | cyclin and CBS domain dival... | XR_002956974.1 | 29% | (many diffs) | |
| 9 | mouse | 83674 | Cnnm1 | cyclin M1 | NM_031396.2 | 54.5% | 52.7% | (many diffs) |
| 10 | mouse | 83674 | Cnnm1 | cyclin M1 | XM_006527482.3 | 54% | 52.2% | (many diffs) |
| 11 | mouse | 83674 | Cnnm1 | cyclin M1 | XM_006527481.3 | 53.3% | 51.6% | (many diffs) |
| 12 | mouse | 83674 | Cnnm1 | cyclin M1 | XM_006527480.3 | 52.8% | 51.1% | (many diffs) |
| 13 | mouse | 83674 | Cnnm1 | cyclin M1 | XR_001782623.1 | 42.4% | (many diffs) | |
| 14 | mouse | 83674 | Cnnm1 | cyclin M1 | XM_006527483.3 | 35.9% | 40.6% | (many diffs) |
| 15 | mouse | 83674 | Cnnm1 | cyclin M1 | XM_006527485.3 | 34.6% | 39.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1650
- ORF length:
- 1581
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcagccgcc ttccccgtgt gctacccgct gggccgcctg ctggactggg 121 cgctgcgcca ggagataagc accttctaca cgcgggagaa gttgctggag acgttgcggg 181 ccgcagaccc ctacagtgac ctggtgaagg aggagctcaa catcatacag ggtgccctgg 241 agctgcgcac caaagtggtg gaggaggtgc tgacccccct gggagactgc ttcatgctgc 301 gctcagacgc ggtgctcgac ttcgccactg tctccgagat cctgcgcagc ggctacactc 361 gcatcccagt gtacgagggt gaccagcggc acaacattgt ggacatttta tttgtcaagg 421 acttggcctt cgtggacccc gacgactgca ccccgctcct cactgtcacc cgcttctaca 481 accggcccct gcattgtgtt ttcaatgaca cccgactgga cacggttctg gaggagttta 541 agaagggaaa atctcacctg gccattgtcc agcgggtgaa taatgaggga gaaggggacc 601 ctttctatga ggtgatgggc attgtcacgc tggaggatat catagaggag attatcaagt 661 cggagatcct ggatgaaact gatctctaca ctgacaatcg gaaaaagcag agggtcccgc 721 aacgggagcg gaagcggcat gacttctcct tgtttaagct ttcggacacg gagatgcggg 781 tgaagatctc accacagctt ctgctagcca cacaccgctt catggccaca gaagtggagc 841 cctttaagtc tctgtacctt tcggagaaga tcctgctccg gctcctgaaa catcccaacg 901 tgatccagga gctgaagttt gatgagaaga acaagaaggc cccggaacac tacctctacc 961 agcgcaaccg ccctgtggac tactttgtgc tgcttctaca gggtaaagtg gaggtggagg 1021 ttggtaagga aggccttcgc tttgaaaatg gagcctttac ttactatggc gtcccagcca 1081 tcatgaccac tgcttgctca gataatgacg tgcggaaggt tggaagtctg gctggatctt 1141 ctgtctttct aaaccggtcc ccttctcgct gcagtgggtt gaatcgctct gagtctccaa 1201 accgagagcg cagtgacttt gggggcagca acacccagct gtacagcagc agcaacaacc 1261 tctacatgcc tgactactca gtccacatcc tcagcgatgt gcagtttgtg aagatcacac 1321 ggcagcaata tcagaacgca ctcactgcct gccacatgga cagctcacct cagtcccctg 1381 acatggaggc cttcacagac ggggactcca ctaaggcccc cacaacccgg ggcacacccc 1441 agacccctaa ggatgacccc gccatcacgc tcctcaacaa caggaacagc ctgccgtcat 1501 cagacgggct gagaagcccc agcgaggtag tgtacctgag gatggaggag ctggccttca 1561 cccaggaaga aatgactgac ttcgaggagc acagcacaca gcagctcacg ctgtctcctg 1621 cagccgttcc cacgagagcc gctatcagat agtgaatgtt gtaacatcaa cctggataca 1681 gagaccagcc cctgcagtag cgattttgag gaaaacgtgg gcaagaagct gctgagaacc 1741 ttgagtggcc aaaaaaggaa gaggtcacca gaaggagaga gaacctctga ggacaactcc 1801 aatttaacac ctctgatcac attgccaact ttcttgtaca aagtggttgg taagcctatc 1861 cctaaccctc tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc 1921 gttaagtcga caatcaacct ctggatta