Transcript: Mouse XM_006527480.3

PREDICTED: Mus musculus cyclin M1 (Cnnm1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cnnm1 (83674)
Length:
4547
CDS:
96..3044

Additional Resources:

NCBI RefSeq record:
XM_006527480.3
NBCI Gene record:
Cnnm1 (83674)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527480.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000077839 GCGGCATGATTTCTCTCTGTT pLKO.1 1856 CDS 100% 4.950 6.930 N Cnnm1 n/a
2 TRCN0000451477 CATTCTGAGGCTCCCAATAAT pLKO_005 3309 3UTR 100% 15.000 12.000 N Cnnm1 n/a
3 TRCN0000077842 CTCTACACTGACAATCGGAAA pLKO.1 1806 CDS 100% 4.050 3.240 N Cnnm1 n/a
4 TRCN0000449840 GGATCCTGAATGCTGTAATAT pLKO_005 2867 CDS 100% 15.000 10.500 N Cnnm1 n/a
5 TRCN0000451364 TGGACATTCTGTTCGTCAAAG pLKO_005 1522 CDS 100% 10.800 7.560 N Cnnm1 n/a
6 TRCN0000077838 CCATAGTTCATGCTTAGCATT pLKO.1 3419 3UTR 100% 4.950 3.465 N Cnnm1 n/a
7 TRCN0000077840 CCTGTACCTTTCGGAGAAGAT pLKO.1 1973 CDS 100% 4.950 3.465 N Cnnm1 n/a
8 TRCN0000077841 GCCTTTACCTACTATGGTGTT pLKO.1 2175 CDS 100% 4.050 2.835 N Cnnm1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527480.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11827 pDONR223 100% 53% 56.2% None (many diffs) n/a
2 ccsbBroad304_11827 pLX_304 0% 53% 56.2% V5 (many diffs) n/a
3 ccsbBroadEn_15035 pDONR223 92.5% 52.8% 51.1% None (many diffs) n/a
4 ccsbBroad304_15035 pLX_304 0% 52.8% 51.1% V5 (not translated due to prior stop codon) (many diffs) n/a
5 TRCN0000476036 CTGATCTAGGTATCATCTTGCTCA pLX_317 19.4% 48.8% 52.1% V5 (many diffs) n/a
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