Construct: ORF ccsbBroad304_15065
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004368.1_s304c1, BRDN0000459777
- Derived from:
- ccsbBroadEn_15065
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAOK3 (51347)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15065
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346488.2 | 100% | 100% | |
| 2 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346489.2 | 100% | 100% | |
| 3 | human | 51347 | TAOK3 | TAO kinase 3 | NM_016281.4 | 100% | 100% | |
| 4 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346487.2 | 99% | 99% | 1195_1221del |
| 5 | human | 51347 | TAOK3 | TAO kinase 3 | XM_005253898.2 | 99% | 99% | 1195_1221del |
| 6 | human | 51347 | TAOK3 | TAO kinase 3 | XM_006719445.3 | 99% | 99% | 1195_1221del |
| 7 | human | 51347 | TAOK3 | TAO kinase 3 | XM_011538437.2 | 99% | 99% | 1195_1221del |
| 8 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019408.2 | 99% | 99% | 1195_1221del |
| 9 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019409.2 | 99% | 99% | 1195_1221del |
| 10 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019410.2 | 99% | 99% | 1195_1221del |
| 11 | human | 51347 | TAOK3 | TAO kinase 3 | XM_024449010.1 | 99% | 99% | 1195_1221del |
| 12 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346491.2 | 81% | 81% | 0_1ins510 |
| 13 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346492.2 | 81% | 81% | 0_1ins510 |
| 14 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019413.2 | 81% | 81% | 0_1ins510 |
| 15 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346490.2 | 80.2% | 80.2% | 0_1ins510;685_711del |
| 16 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019412.2 | 80.2% | 80.2% | 0_1ins510;685_711del |
| 17 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346493.2 | 78.4% | 77.5% | (many diffs) |
| 18 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346494.2 | 48.7% | 48.7% | 0_1ins1380 |
| 19 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346495.2 | 48.7% | 48.7% | 0_1ins1380 |
| 20 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346496.2 | 46.1% | 45.3% | (many diffs) |
| 21 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346497.2 | 46.1% | 45.3% | (many diffs) |
| 22 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_001081308.2 | 88.5% | 95.5% | (many diffs) |
| 23 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_001199685.1 | 88.5% | 95.5% | (many diffs) |
| 24 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_183306.2 | 88.5% | 95.5% | (many diffs) |
| 25 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_006530385.3 | 88.5% | 95.5% | (many diffs) |
| 26 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248219.2 | 88.5% | 95.5% | (many diffs) |
| 27 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248220.2 | 88.5% | 95.5% | (many diffs) |
| 28 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248221.2 | 72.4% | 77.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2760
- ORF length:
- 2694
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcg taaaggggtg ctgaaggacc cagagattgc cgatctattc tacaaagatg 121 atcctgagga actttttatt ggtttgcatg aaattggaca tggaagtttt ggagcagttt 181 attttgctac aaatgctcac accagtgagg tggtggcaat taagaagatg tcctatagtg 241 ggaagcagac ccatgagaaa tggcaagata ttcttaagga agttaaattt ttacgacaat 301 tgaagcatcc taatactatt gagtacaaag gctgttactt gaaagaacac actgcttggt 361 tggtgatgga atattgctta ggctcagcct ctgatttatt agaagttcat aaaaaaccac 421 ttcaggaagt ggagatcgct gccattactc atggagcctt gcatggacta gcctacctac 481 attctcatgc attgattcat agggatatta aagcaggaaa tattcttcta acagagccag 541 gtcaggtaaa actagctgat tttggatctg cttcaatggc ttctcctgcc aactccttcg 601 tgggcacacc ttactggatg gctccagagg tgatcttagc tatggatgaa ggacagtatg 661 atgggaaagt tgatatttgg tcacttggca tcacttgtat tgaattggcg gaacggaagc 721 cgcccctttt caacatgaat gcaatgagtg ccttatatca cattgcccag aatgactccc 781 caacgttaca gtctaatgaa tggacagact cctttaggag atttgttgat tactgcttgc 841 agaaaatacc tcaggaaagg ccaacatcag cagaactatt aaggcatgac tttgttcgac 901 gagaccggcc actacgtgtc ctcattgacc tcatacagag gacaaaagat gcagttcgtg 961 agctagataa cctacagtac cgaaaaatga aaaaaatact tttccaagag acacggaatg 1021 gacccttgaa tgagtcacag gaggatgagg aagacagtga acatggaacc agcctgaaca 1081 gggaaatgga cagcctgggc agcaaccatt ccattccaag catgtccgtg agcacaggca 1141 gccagagcag cagtgtgaac agcatgcagg aagtcatgga cgagagcagt tccgaacttg 1201 tcatgatgca cgatgacgaa agcacaatca attccagctc ctccgtcgtg cataagaaag 1261 atcatgtatt cataagggat gaggcgggcc acggcgatcc caggcctgag ccgcggccta 1321 cccagtcagt tcagagccag gccctccact accggaacag agagcgcttt gccacgatca 1381 aatcagcatc tttggttaca cgacagatcc atgagcatga gcaggagaac gagttgcggg 1441 aacagatgtc aggttataag cggatgcggc gccagcacca gaagcagctg atcgccctgg 1501 agaacaagct gaaggctgag atggacgagc accgcctcaa gctacagaag gaggtggaga 1561 cgcatgccaa caactcgtcc atcgagctgg agaagctggc caagaagcaa gtggctatca 1621 tagaaaagga ggcaaaggta gctgcagcag atgagaagaa gttccagcaa cagatcttgg 1681 cccagcagaa gaaagatttg acaactttct tagaaagtca gaagaagcag tataagattt 1741 gtaaggaaaa aataaaagag gaaatgaatg aggaccatag cacacccaag aaagagaagc 1801 aagagcggat ctccaaacat aaagagaact tgcagcacac acaggctgaa gaggaagccc 1861 accttctcac tcaacagaga ctgtactacg acaaaaattg tcgtttcttc aagcggaaaa 1921 taatgatcaa gcggcacgag gtggagcagc agaacattcg ggaggaacta aataaaaaga 1981 ggacccagaa ggagatggag catgccatgc taatccggca cgacgagtcc acccgagagc 2041 tagagtacag gcagctgcac acgttacaga agctacgcat ggatctgatc cgtttacagc 2101 accagacgga actggaaaac cagctggagt acaataagag gcgagaaaga gaactgcaca 2161 gaaagcatgt catggaactt cggcaacagc caaaaaactt aaaggccatg gaaatgcaaa 2221 ttaaaaaaca gtttcaggac acttgcaaag tacagaccaa acagtataaa gcactcaaga 2281 atcaccagtt ggaagttact ccaaagaatg agcacaaaac aatcttaaag acactgaaag 2341 atgagcagac aagaaaactt gccattttgg cagagcagta tgaacagagt ataaatgaaa 2401 tgatggcctc tcaagcgtta cggctagatg aggctcaaga agcagaatgc caggccttga 2461 ggctacagct ccagcaggaa atggagctgc tcaacgccta ccagagcaaa atcaagatgc 2521 aaacagaggc acaacatgaa cgtgagctcc agaagctaga gcagagagtg tctctgcgca 2581 gagcacacct tgagcagaag attgaagagg agctggctgc ccttcagaag gaacgcagcg 2641 agagaataaa gaacctattg gaaaggcaag agcgagagat tgaaactttt gacatggaga 2701 gcctcagaat gggatttggg aatttggtta cattagattt tcctaaggag gactacagat 2761 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 2821 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 2881 ggatta