Construct: ORF ccsbBroad304_15162

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005453.2_s304c1, BRDN0000459534
Derived from:
ccsbBroadEn_15162
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP3K19 (80122)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15162
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80122 MAP3K19 mitogen-activated protein k... NM_001282883.1 36.5% 36.5% 1_813del;1318_1380del
2 human 80122 MAP3K19 mitogen-activated protein k... NM_001018047.2 36.3% 36.3% 1_819del;1324_1386del
3 human 80122 MAP3K19 mitogen-activated protein k... NM_001018046.2 32.9% 32.9% 1_963del;1468_1530del
4 human 80122 MAP3K19 mitogen-activated protein k... XM_017005006.2 13.9% 13.9% 1_3051del;3556_3618del
5 human 80122 MAP3K19 mitogen-activated protein k... NM_001018044.2 13.8% 13.8% 1_3078del;3583_3645del
6 human 80122 MAP3K19 mitogen-activated protein k... XM_011511896.3 13.6% 13.6% 1_3132del;3637_3699del
7 human 80122 MAP3K19 mitogen-activated protein k... XM_011511897.3 13.6% 13.6% 1_3132del;3637_3699del
8 human 80122 MAP3K19 mitogen-activated protein k... XM_011511894.3 12.9% 12.9% 1_3333del;3838_3900del
9 human 80122 MAP3K19 mitogen-activated protein k... XM_017005004.2 12.9% 12.9% 1_3333del;3838_3900del
10 human 80122 MAP3K19 mitogen-activated protein k... XM_017005005.2 12.9% 12.9% 1_3333del;3838_3900del
11 human 80122 MAP3K19 mitogen-activated protein k... NM_025052.4 12.6% 12.6% 1_3417del;3922_3984del
12 human 80122 MAP3K19 mitogen-activated protein k... XM_011511892.1 12.6% 12.6% 1_3417del;3922_3984del
13 human 80122 MAP3K19 mitogen-activated protein k... XM_017005003.1 12.6% 12.6% 1_3417del;3922_3984del
14 human 80122 MAP3K19 mitogen-activated protein k... XM_011511891.2 12.4% 12.4% 1_3468del;3973_4035del
15 human 80122 MAP3K19 mitogen-activated protein k... XR_002959344.1 9.8% 1_3556del;4061_5101del
16 human 80122 MAP3K19 mitogen-activated protein k... XR_002959343.1 9.5% 1_3740del;4245_5285del
17 human 80122 MAP3K19 mitogen-activated protein k... XR_001738962.1 8.9% 1_3708del;4087_4088ins125
18 mouse 22625 Map3k19 mitogen-activated protein k... NM_011737.1 11.2% 12.2% (many diffs)
19 mouse 22625 Map3k19 mitogen-activated protein k... XM_006529396.3 9.7% 10.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
570
ORF length:
504
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gtttgttcct ggtggctcaa tctctagtat tataaaccgt tttgggccat
121tgcctgagat ggtgttctgt aaatatacga aacaaatact tcaaggtgtt gcttatctcc
181atgagaactg tgtggtacat cgcgatatca aaggaaataa tgttatgctc atgccaactg
241gaataataaa gctgattgac tttggctgtg ccaggcgttt ggcctgggca ggtttaaatg
301gcacccacag tgacatgctt aagtccatgc atgggactcc atattggatg gccccagaag
361tcatcaatga gtctggctat ggacggaaat cagatatctg gagcattggt tgtactgtgt
421ttgagatggc tacagggaag cctccactgg cttccatgga caggatggcc gccatgtttt
481acatcggagc acaccgaggg ctgatgcctc ctttaccaga ccacttctca gaaaatgcag
541cagactttgt gcgcatgtgc ctgaccaggt acccaacttt cttgtacaaa gtggttggta
601agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
661ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)