Construct: ORF ccsbBroad304_15736

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000003.1_s304c1, BRDN0000404564
Derived from:
ccsbBroadEn_15736
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATF7 (11016)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15736
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11016 ATF7 activating transcription fa... NM_001206682.1 99.4% 99.1% 34C>A;129C>T
2 human 11016 ATF7 activating transcription fa... NM_001206683.1 99.4% 99.1% 34C>A;129C>T
3 human 11016 ATF7 activating transcription fa... NM_001366562.1 99.4% 99.1% 34C>A;129C>T
4 human 11016 ATF7 activating transcription fa... NM_001366563.1 70.6% 60.3% 1_7delATGAAAT;41C>A;52_53ins97
5 human 114108587 ATF7-NPFF ATF7-NPFF readthrough NM_001366560.1 23.4% 18.3% (many diffs)
6 human 114108587 ATF7-NPFF ATF7-NPFF readthrough NM_001366559.1 23.2% 18.2% (many diffs)
7 human 11016 ATF7 activating transcription fa... NM_001130060.2 22.5% 20.1% (many diffs)
8 human 11016 ATF7 activating transcription fa... NM_001366556.2 22.3% 17.5% (many diffs)
9 human 11016 ATF7 activating transcription fa... NM_001366558.2 22.3% 17.5% (many diffs)
10 human 11016 ATF7 activating transcription fa... NM_006856.3 22.3% 17.5% (many diffs)
11 human 11016 ATF7 activating transcription fa... NM_001366555.2 20.4% 19.4% (many diffs)
12 human 11016 ATF7 activating transcription fa... NR_073163.2 16% (many diffs)
13 human 114108587 ATF7-NPFF ATF7-NPFF readthrough NR_159377.1 14.5% (many diffs)
14 mouse 223922 Atf7 activating transcription fa... NM_001310070.1 24.7% 18.9% (many diffs)
15 mouse 223922 Atf7 activating transcription fa... NM_001310066.1 21.6% 16.7% (many diffs)
16 mouse 223922 Atf7 activating transcription fa... NM_001310067.1 21.6% 16.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
417
ORF length:
351
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg agacgacaga ccgtttgtgt gcaatgccac gggctgtgga cagagattta
121caaacgagga ccacctggca gttcataaac acaagcatga gatgacattg aaatttggcc
181cagcccgaac tgattcagtc atcattgcag atcaaacgcc tactccaact agattcctga
241agaactgtga ggaggtggga ctcttcaatg aactagctag ctcctttgaa catgaattca
301agaaagctgc agatgaggat gagaaaaagg caagaagcag gactgttgcc aaaaaactgg
361tggtattcag acctaggcta tttttattgt gctttgggat aattttctta attggttnnc
421caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
481ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
541tta

Download FASTA (ORF) (Full)