Construct: ORF ccsbBroad304_15919

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012613.1_s304c1, BRDN0000402565
Derived from:
ccsbBroadEn_15919
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB5IF (55969)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15919
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55969 RAB5IF RAB5 interacting factor NM_001374178.1 65.4% 57.3% (many diffs)
2 human 55969 RAB5IF RAB5 interacting factor NM_018840.5 61.4% 54% (many diffs)
3 human 55969 RAB5IF RAB5 interacting factor NM_001199534.2 57.9% 58.3% (many diffs)
4 human 55969 RAB5IF RAB5 interacting factor NM_199483.3 56.8% 51.7% (many diffs)
5 human 55969 RAB5IF RAB5 interacting factor NR_164350.1 24.8% 1_173del;435_1050del
6 human 55969 RAB5IF RAB5 interacting factor NR_026562.4 22.1% 1_173del;435_1180del
7 human 55969 RAB5IF RAB5 interacting factor NR_164351.1 21.7% 1_173del;391_411del;456_1201del
8 mouse 67388 1110008F13Rik RIKEN cDNA 1110008F13 gene NM_026124.3 57.6% 52.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
327
ORF length:
261
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cggcgggcgg cggaaggagg agccgcctca gccgcagctg gccaacgggg
121ccctcaaagt ctccgtctgg agtaaggtgc tgcggagcga cgcggcctgg gaggataagg
181atgaattttt agatgtgatc tactggttcc gacagatcat tgctgtggtc ctgggtgtca
241tttggggagt tttgccatta cgagggttct tgggaatagc agggaaaggc cattgctgct
301ctggagctgt gtgtgtgtgt gatgactnnc caactttctt gtacaaagtg gttggtaagc
361ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
421ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)