Construct: ORF ccsbBroad304_15966

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008674.1_s304c1, BRDN0000405591
Derived from:
ccsbBroadEn_15966
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTMR14 (64419)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15966
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64419 MTMR14 myotubularin related protei... XM_024453709.1 87.4% 87.4% 1070_1249del
2 human 64419 MTMR14 myotubularin related protei... XM_017007043.1 82.7% 82.7% 1_81del;1151_1330del
3 human 64419 MTMR14 myotubularin related protei... XM_011534013.1 78.8% 78.8% 1071_1406del
4 human 64419 MTMR14 myotubularin related protei... NM_022485.5 77.5% 77.5% 1_363del
5 human 64419 MTMR14 myotubularin related protei... XM_011534012.1 75% 75% 1_81del;1152_1487del
6 human 64419 MTMR14 myotubularin related protei... XM_017007039.1 74.3% 74.3% 1_432del
7 human 64419 MTMR14 myotubularin related protei... XM_017007042.2 72.8% 72.8% 1_363del;819_820ins75
8 human 64419 MTMR14 myotubularin related protei... XM_017007041.1 70.5% 70.5% 1_81del;537_538ins75;1077_1412del
9 human 64419 MTMR14 myotubularin related protei... XM_017007040.1 69.8% 69.8% 1_432del;888_889ins75
10 human 64419 MTMR14 myotubularin related protei... NM_001077526.3 69.7% 69.7% 1_363del;1433_1612del
11 human 64419 MTMR14 myotubularin related protei... XM_017007045.2 67.9% 67.9% 0_1ins279;791_970del
12 human 64419 MTMR14 myotubularin related protei... XM_017007036.1 67.1% 67.1% 1_432del;1502_1681del
13 human 64419 MTMR14 myotubularin related protei... XM_017007038.2 65.5% 65.5% 1_363del;819_820ins75;1358_1537del
14 human 64419 MTMR14 myotubularin related protei... NM_001077525.3 64.1% 64.1% 1_363del;1434_1769del
15 human 64419 MTMR14 myotubularin related protei... XM_017007037.1 63.1% 63.1% 1_432del;888_889ins75;1427_1606del
16 human 64419 MTMR14 myotubularin related protei... XM_017007034.1 61.9% 61.9% 1_432del;1503_1838del
17 human 64419 MTMR14 myotubularin related protei... XM_024453710.1 61.2% 61.2% 0_1ins279;792_1127del
18 human 64419 MTMR14 myotubularin related protei... XM_005265400.2 60.3% 60.3% 1_363del;819_820ins75;1359_1694del
19 human 64419 MTMR14 myotubularin related protei... XM_017007035.1 58.2% 58.2% 1_432del;888_889ins75;1428_1763del
20 human 64419 MTMR14 myotubularin related protei... XM_017007044.2 56.5% 56.5% 0_1ins279;177_178ins75;717_1052del
21 human 64419 MTMR14 myotubularin related protei... XR_245152.2 54.2% 1_474del;1545_1700del;1882_2304del
22 human 64419 MTMR14 myotubularin related protei... XR_001740233.2 51% (many diffs)
23 human 64419 MTMR14 myotubularin related protei... XR_001740231.1 49.7% 1_683del;1754_1909del;2091_2513del
24 human 64419 MTMR14 myotubularin related protei... XR_001740232.1 46.7% (many diffs)
25 mouse 97287 Mtmr14 myotubularin related protei... XM_006506825.1 70.9% 71.8% (many diffs)
26 mouse 97287 Mtmr14 myotubularin related protei... XM_006506823.3 62.8% 63.6% (many diffs)
27 mouse 97287 Mtmr14 myotubularin related protei... XM_006506826.3 60.8% 55.6% (many diffs)
28 mouse 97287 Mtmr14 myotubularin related protei... XM_006506824.3 59.3% 53.5% (many diffs)
29 mouse 97287 Mtmr14 myotubularin related protei... NM_026849.2 57.8% 58.5% (many diffs)
30 mouse 97287 Mtmr14 myotubularin related protei... XM_006506827.3 55.1% 55.5% (many diffs)
31 mouse 97287 Mtmr14 myotubularin related protei... XR_377503.3 45.9% (many diffs)
32 mouse 97287 Mtmr14 myotubularin related protei... XR_001785185.1 43% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1317
ORF length:
1251
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ccggtgcaga ggacggtttg tctgcccagt aatcctgttc aagggcaagc
121acatttgcag gtcggccaca ctggctggat ggggagagct gtatggacgc tcaggctaca
181actatttttt ctcagggggt gcagatgatg cctgggcaga tgtggaggac gtcacggagg
241aggactgtgc tcttcgaagt ggtgacacgc atctttttga taaggtcaga ggctatgaca
301tcaagctgct tcgatacctg tcagtcaaat acatctgtga cctgatggtg gagaacaaga
361aggtgaagtt tggcatgaat gtaacctcct ctgagaaggt ggacaaagcc cagcgctatg
421ccgacttcac tctcctctcc atcccgtatc caggctgtga atttttcaag gaatataaag
481atcgggatta catggcagaa gggctcatat ttaactggaa gcaggactac gttgatgccc
541cattgagcat ccccgacttc ctgactcact ctctgaacat tgactggagc cagtatcagt
601gttgggatct ggtgcaacaa acacaaaact acctgaagct gctgctttcc ttagttaaca
661gtgatgatga cagcgggctg ctggtacact gtatctcagg ctgggatcgg acccccctct
721tcatctccct cctgcgcctt tccttgtggg ctgatgggct catccacacg tccctgaagc
781ccactgagat cctctacctc actgtggcct atgactggtt cctcttcggg cacatgttgg
841tagatcggct cagcaaaggg gaggagattt tcttcttctg cttcaatttt ttgaagcata
901ttacctccga ggagttctct gctctgaaga cccagaggag gaagagtttg ccagcccggg
961atggaggctt caccctggaa gacatctgca tgctgagacg aaaggaccgt ggcagcacca
1021ccagccttgg cagcgacttc tccctggtca tggagagttc cccaggagcc actgggagct
1081tcacctatga ggccgtggag ctggtcccag caggagcgcc aactcaggca gcttggcttg
1141cagccctgag tgatcgagag actcggctgc aggaggtgcg ctcagccttc ttggctgcgt
1201acagcagcac agtggggctt cgggcagtag cccccagtcc ttccggtgcc atcgggggcc
1261tgctggagca atttgcccgt ggtgttggac tccggagcat cagcagcaat gccttgtnnc
1321caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1381ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1441tta

Download FASTA (ORF) (Full)