Construct: ORF ccsbBroad304_15966
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008674.1_s304c1, BRDN0000405591
- Derived from:
- ccsbBroadEn_15966
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTMR14 (64419)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15966
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64419 | MTMR14 | myotubularin related protei... | XM_024453709.1 | 87.4% | 87.4% | 1070_1249del |
| 2 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007043.1 | 82.7% | 82.7% | 1_81del;1151_1330del |
| 3 | human | 64419 | MTMR14 | myotubularin related protei... | XM_011534013.1 | 78.8% | 78.8% | 1071_1406del |
| 4 | human | 64419 | MTMR14 | myotubularin related protei... | NM_022485.5 | 77.5% | 77.5% | 1_363del |
| 5 | human | 64419 | MTMR14 | myotubularin related protei... | XM_011534012.1 | 75% | 75% | 1_81del;1152_1487del |
| 6 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007039.1 | 74.3% | 74.3% | 1_432del |
| 7 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007042.2 | 72.8% | 72.8% | 1_363del;819_820ins75 |
| 8 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007041.1 | 70.5% | 70.5% | 1_81del;537_538ins75;1077_1412del |
| 9 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007040.1 | 69.8% | 69.8% | 1_432del;888_889ins75 |
| 10 | human | 64419 | MTMR14 | myotubularin related protei... | NM_001077526.3 | 69.7% | 69.7% | 1_363del;1433_1612del |
| 11 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007045.2 | 67.9% | 67.9% | 0_1ins279;791_970del |
| 12 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007036.1 | 67.1% | 67.1% | 1_432del;1502_1681del |
| 13 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007038.2 | 65.5% | 65.5% | 1_363del;819_820ins75;1358_1537del |
| 14 | human | 64419 | MTMR14 | myotubularin related protei... | NM_001077525.3 | 64.1% | 64.1% | 1_363del;1434_1769del |
| 15 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007037.1 | 63.1% | 63.1% | 1_432del;888_889ins75;1427_1606del |
| 16 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007034.1 | 61.9% | 61.9% | 1_432del;1503_1838del |
| 17 | human | 64419 | MTMR14 | myotubularin related protei... | XM_024453710.1 | 61.2% | 61.2% | 0_1ins279;792_1127del |
| 18 | human | 64419 | MTMR14 | myotubularin related protei... | XM_005265400.2 | 60.3% | 60.3% | 1_363del;819_820ins75;1359_1694del |
| 19 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007035.1 | 58.2% | 58.2% | 1_432del;888_889ins75;1428_1763del |
| 20 | human | 64419 | MTMR14 | myotubularin related protei... | XM_017007044.2 | 56.5% | 56.5% | 0_1ins279;177_178ins75;717_1052del |
| 21 | human | 64419 | MTMR14 | myotubularin related protei... | XR_245152.2 | 54.2% | 1_474del;1545_1700del;1882_2304del | |
| 22 | human | 64419 | MTMR14 | myotubularin related protei... | XR_001740233.2 | 51% | (many diffs) | |
| 23 | human | 64419 | MTMR14 | myotubularin related protei... | XR_001740231.1 | 49.7% | 1_683del;1754_1909del;2091_2513del | |
| 24 | human | 64419 | MTMR14 | myotubularin related protei... | XR_001740232.1 | 46.7% | (many diffs) | |
| 25 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XM_006506825.1 | 70.9% | 71.8% | (many diffs) |
| 26 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XM_006506823.3 | 62.8% | 63.6% | (many diffs) |
| 27 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XM_006506826.3 | 60.8% | 55.6% | (many diffs) |
| 28 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XM_006506824.3 | 59.3% | 53.5% | (many diffs) |
| 29 | mouse | 97287 | Mtmr14 | myotubularin related protei... | NM_026849.2 | 57.8% | 58.5% | (many diffs) |
| 30 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XM_006506827.3 | 55.1% | 55.5% | (many diffs) |
| 31 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XR_377503.3 | 45.9% | (many diffs) | |
| 32 | mouse | 97287 | Mtmr14 | myotubularin related protei... | XR_001785185.1 | 43% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1317
- ORF length:
- 1251
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc ccggtgcaga ggacggtttg tctgcccagt aatcctgttc aagggcaagc 121 acatttgcag gtcggccaca ctggctggat ggggagagct gtatggacgc tcaggctaca 181 actatttttt ctcagggggt gcagatgatg cctgggcaga tgtggaggac gtcacggagg 241 aggactgtgc tcttcgaagt ggtgacacgc atctttttga taaggtcaga ggctatgaca 301 tcaagctgct tcgatacctg tcagtcaaat acatctgtga cctgatggtg gagaacaaga 361 aggtgaagtt tggcatgaat gtaacctcct ctgagaaggt ggacaaagcc cagcgctatg 421 ccgacttcac tctcctctcc atcccgtatc caggctgtga atttttcaag gaatataaag 481 atcgggatta catggcagaa gggctcatat ttaactggaa gcaggactac gttgatgccc 541 cattgagcat ccccgacttc ctgactcact ctctgaacat tgactggagc cagtatcagt 601 gttgggatct ggtgcaacaa acacaaaact acctgaagct gctgctttcc ttagttaaca 661 gtgatgatga cagcgggctg ctggtacact gtatctcagg ctgggatcgg acccccctct 721 tcatctccct cctgcgcctt tccttgtggg ctgatgggct catccacacg tccctgaagc 781 ccactgagat cctctacctc actgtggcct atgactggtt cctcttcggg cacatgttgg 841 tagatcggct cagcaaaggg gaggagattt tcttcttctg cttcaatttt ttgaagcata 901 ttacctccga ggagttctct gctctgaaga cccagaggag gaagagtttg ccagcccggg 961 atggaggctt caccctggaa gacatctgca tgctgagacg aaaggaccgt ggcagcacca 1021 ccagccttgg cagcgacttc tccctggtca tggagagttc cccaggagcc actgggagct 1081 tcacctatga ggccgtggag ctggtcccag caggagcgcc aactcaggca gcttggcttg 1141 cagccctgag tgatcgagag actcggctgc aggaggtgcg ctcagccttc ttggctgcgt 1201 acagcagcac agtggggctt cgggcagtag cccccagtcc ttccggtgcc atcgggggcc 1261 tgctggagca atttgcccgt ggtgttggac tccggagcat cagcagcaat gccttgtnnc 1321 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 1381 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 1441 tta