Construct: ORF ccsbBroad304_16081
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014947.1_s304c1, BRDN0000399706
- Derived from:
- ccsbBroadEn_16081
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB3IP (117177)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16081
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_001024647.3 | 100% | 100% | |
| 2 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_001278402.1 | 100% | 100% | |
| 3 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_017018777.2 | 100% | 100% | |
| 4 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_017018774.2 | 98% | 98% | 1_15del |
| 5 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_024448832.1 | 98% | 98% | 1_15del |
| 6 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_022456.5 | 55.2% | 55.2% | 1_618del |
| 7 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_017018773.1 | 55.2% | 55.2% | 1_618del |
| 8 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_175623.4 | 53.3% | 53.3% | 1_666del |
| 9 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_006719226.3 | 49.8% | 49.8% | 1_768del |
| 10 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_175624.4 | 41% | 36.5% | 1_618del;1130_1131ins100;1185_1186ins95 |
| 11 | human | 117177 | RAB3IP | RAB3A interacting protein | NM_175625.4 | 39.7% | 35.3% | 1_666del;1178_1179ins100;1233_1234ins95 |
| 12 | human | 117177 | RAB3IP | RAB3A interacting protein | XM_006719227.3 | 37% | 33% | 1_768del;1280_1281ins100;1335_1336ins95 |
| 13 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944488.2 | 8.4% | 1_785del;1179_1180insGTGAG;1543_8944del | |
| 14 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944491.2 | 8.3% | 1_785del;1055_1221del;1715_9116del | |
| 15 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_001748572.2 | 8.1% | 1_815del;1209_1210insGTGAG;1573_9305del | |
| 16 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944489.2 | 7.3% | (many diffs) | |
| 17 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944490.2 | 7.2% | 1_785del;1184_1185ins113;1435_8836del | |
| 18 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944487.2 | 7.1% | 1_785del;1176_1177ins118;1430_8831del | |
| 19 | human | 117177 | RAB3IP | RAB3A interacting protein | XR_944492.2 | 5.8% | 1_785del;1055_1056ins242;1306_8707del | |
| 20 | human | 117177 | RAB3IP | RAB3A interacting protein | NR_103519.2 | 5.5% | 1_815del;1085_1086ins242;1336_9091del | |
| 21 | human | 117177 | RAB3IP | RAB3A interacting protein | NR_103520.2 | 5.3% | 1_1132del;1402_1403ins242;1653_9408del | |
| 22 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_006513548.3 | 87% | 94.8% | (many diffs) |
| 23 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_017313908.1 | 87% | 94.8% | (many diffs) |
| 24 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_006513547.3 | 75.9% | 82.8% | (many diffs) |
| 25 | mouse | 216363 | Rab3ip | RAB3A interacting protein | NM_001003950.2 | 51.6% | 56.3% | (many diffs) |
| 26 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_006513544.1 | 48% | 52.3% | (many diffs) |
| 27 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_006513545.3 | 48% | 52.3% | (many diffs) |
| 28 | mouse | 216363 | Rab3ip | RAB3A interacting protein | XM_006513546.3 | 48% | 52.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 828
- ORF length:
- 762
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt gagagaagca aatatcaagc aggcaacagc agaaaaacag ctaaaagaag 121 cacaaggaaa aattgatgta cttcaagctg aagtagctgc attgaagaca cttgtattgt 181 ccagttctcc aacatcacct acgcaggagc ctttgccagg tggaaagaca ccttttaaaa 241 aggggcatac aagaaataaa agcacaagca gtgctatgag tggcagtcat caggacctca 301 gtgtgataca gccaattgta aaagactgca aagaggctga cttatccttg tataatgaat 361 tccgattgtg gaaggatgag cccacaatgg acaggacgtg tcctttctta gacaaaatct 421 accaggaaga tatctttcca tgtttaacat tctcaaaaag tgagttggct tcagctgttc 481 tggaggctgt ggaaaacaat actctaagca ttgaaccagt gggattacaa cctatccggt 541 ttgtgaaagc ttctgcagtt gaatgcggag gaccaaaaaa atgtgctctc actggccaga 601 gtaagtcctg taaacacaga attaaattag gggactcaag caactattat tatatttctc 661 ctttttgcag atacaggatc acttctgtat gtaacttttt tacatacatt cgatacattc 721 agcagggact cgtgaaacag caggatgttg atcagatgtt ttgggaggtt atgcagttga 781 gaaaagagat gtcattggca aagctgggtt atttcaaaga ggaactctnn ccaactttct 841 tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt 901 aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta