Construct: ORF ccsbBroad304_16160

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004996.1_s304c1, BRDN0000402053
Derived from:
ccsbBroadEn_16160
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PKD1P1 (339044)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_16160
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100288332 NPIPA5 nuclear pore complex intera... NM_001351200.1 100% 100%
2 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452522.1 99.8% 99.5% 277C>T
3 human 642778 NPIPA3 nuclear pore complex intera... XM_005255485.4 99.5% 99.1% 277C>T;364T>C;510C>T
4 human 642799 NPIPA2 nuclear pore complex intera... XM_005255492.4 99.5% 99.1% 277C>T;364T>C;510C>T
5 human 101059938 NPIPA7 nuclear pore complex intera... XM_024450138.1 99.2% 98.2% (many diffs)
6 human 101059938 NPIPA7 nuclear pore complex intera... XM_024450137.1 90.6% 87.2% (many diffs)
7 human 102724993 LOC102724993 nuclear pore complex-intera... XM_017030213.2 85.6% 81.1% (many diffs)
8 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452521.1 81% 73.6% (many diffs)
9 human 100288332 NPIPA5 nuclear pore complex intera... XM_011522336.3 80% 77.7% (many diffs)
10 human 642799 NPIPA2 nuclear pore complex intera... XM_006720917.4 79.7% 76.4% (many diffs)
11 human 642778 NPIPA3 nuclear pore complex intera... XM_011522581.1 79.7% 76.4% (many diffs)
12 human 642778 NPIPA3 nuclear pore complex intera... XM_011522583.3 79.7% 76.4% (many diffs)
13 human 642799 NPIPA2 nuclear pore complex intera... XM_011522593.1 79.7% 76.4% (many diffs)
14 human 642799 NPIPA2 nuclear pore complex intera... XM_011522594.3 79.7% 76.4% (many diffs)
15 human 101059938 NPIPA7 nuclear pore complex intera... XM_024450139.1 76.3% 72.9% (many diffs)
16 human 642778 NPIPA3 nuclear pore complex intera... XM_011522584.2 75.4% 69.3% (many diffs)
17 human 642799 NPIPA2 nuclear pore complex intera... XM_011522595.2 75.4% 69.3% (many diffs)
18 human 102724993 LOC102724993 nuclear pore complex-intera... XR_001756353.1 68.7% (many diffs)
19 human 100288332 NPIPA5 nuclear pore complex intera... NM_001277325.2 64.4% 61.2% (many diffs)
20 human 9284 NPIPA1 nuclear pore complex intera... NM_006985.4 64.3% 61% (many diffs)
21 human 642778 NPIPA3 nuclear pore complex intera... NM_001277323.1 64.2% 60.4% (many diffs)
22 human 642799 NPIPA2 nuclear pore complex intera... NM_001277324.1 64.2% 60.4% (many diffs)
23 human 729978 NPIPB2 nuclear pore complex intera... XM_024450430.1 63.4% 53.1% (many diffs)
24 human 100288332 NPIPA5 nuclear pore complex intera... XM_011522329.3 61.7% 58.7% (many diffs)
25 human 642799 NPIPA2 nuclear pore complex intera... XM_011522587.1 61.5% 57.5% (many diffs)
26 human 642778 NPIPA3 nuclear pore complex intera... XM_024450380.1 61.5% 57.5% (many diffs)
27 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452519.1 61% 57.9% (many diffs)
28 human 642799 NPIPA2 nuclear pore complex intera... XM_024450387.1 61% 55% (many diffs)
29 human 101059938 NPIPA7 nuclear pore complex intera... NM_001282507.1 60.7% 57.1% (many diffs)
30 human 101059953 NPIPA8 nuclear pore complex intera... NM_001282511.2 60.7% 57.1% (many diffs)
31 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022834.1 60.7% 57.1% (many diffs)
32 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022835.1 60.7% 57.1% (many diffs)
33 human 100288332 NPIPA5 nuclear pore complex intera... XM_024450132.1 59% 51.9% (many diffs)
34 human 642778 NPIPA3 nuclear pore complex intera... XM_017023554.1 58.8% 51.1% (many diffs)
35 human 642778 NPIPA3 nuclear pore complex intera... XM_024450379.1 58.8% 51.1% (many diffs)
36 human 642799 NPIPA2 nuclear pore complex intera... XM_024450385.1 58.8% 51.1% (many diffs)
37 human 642799 NPIPA2 nuclear pore complex intera... XM_024450386.1 58.8% 51.1% (many diffs)
38 human 642778 NPIPA3 nuclear pore complex intera... XM_011522580.2 58.4% 55.2% (many diffs)
39 human 642799 NPIPA2 nuclear pore complex intera... XM_024450388.1 58.4% 55.2% (many diffs)
40 human 642778 NPIPA3 nuclear pore complex intera... XM_011522578.2 57.3% 51.1% (many diffs)
41 human 642799 NPIPA2 nuclear pore complex intera... XM_024450384.1 57.3% 51.1% (many diffs)
42 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022833.2 56.6% 51.4% (many diffs)
43 human 729978 NPIPB2 nuclear pore complex intera... XM_024450427.1 56.1% 44.7% (many diffs)
44 human 100288332 NPIPA5 nuclear pore complex intera... XM_011522337.1 55.8% 54.2% (many diffs)
45 human 101059938 NPIPA7 nuclear pore complex intera... XM_011522339.3 55.6% 52.5% (many diffs)
46 human 101059938 NPIPA7 nuclear pore complex intera... XM_024450136.1 55.6% 53.9% (many diffs)
47 human 642778 NPIPA3 nuclear pore complex intera... XM_011522585.1 55.3% 53.6% (many diffs)
48 human 642799 NPIPA2 nuclear pore complex intera... XM_011522596.1 55.3% 53.6% (many diffs)
49 human 102724993 LOC102724993 nuclear pore complex-intera... XM_017030211.2 54.7% 49.2% (many diffs)
50 human 642778 NPIPA3 nuclear pore complex intera... XM_011522576.2 54.6% 49.2% (many diffs)
51 human 642778 NPIPA3 nuclear pore complex intera... XM_011522577.2 54.6% 49.2% (many diffs)
52 human 642778 NPIPA3 nuclear pore complex intera... XM_017023553.1 54.6% 49.2% (many diffs)
53 human 642799 NPIPA2 nuclear pore complex intera... XM_024450381.1 54.6% 49.2% (many diffs)
54 human 642799 NPIPA2 nuclear pore complex intera... XM_024450382.1 54.6% 49.2% (many diffs)
55 human 642799 NPIPA2 nuclear pore complex intera... XM_024450383.1 54.6% 49.2% (many diffs)
56 human 101059938 NPIPA7 nuclear pore complex intera... XM_005255735.5 54.5% 48.7% (many diffs)
57 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452520.1 54.3% 49.2% (many diffs)
58 human 728888 NPIPB11 nuclear pore complex intera... XM_024450422.1 53.8% 41.4% (many diffs)
59 human 100288332 NPIPA5 nuclear pore complex intera... XR_002957772.1 51.8% (many diffs)
60 human 102724993 LOC102724993 nuclear pore complex-intera... XR_001756352.1 46.4% (many diffs)
61 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452523.1 41.5% 44% (many diffs)
62 human 728741 NPIPB6 nuclear pore complex intera... XM_011545931.2 36.4% 27.1% (many diffs)
63 human 728741 NPIPB6 nuclear pore complex intera... XM_005255741.4 36.2% 27.3% (many diffs)
64 human 728741 NPIPB6 nuclear pore complex intera... XM_017023630.1 36.2% 27.3% (many diffs)
65 human 728741 NPIPB6 nuclear pore complex intera... XM_024450419.1 36.2% 27.3% (many diffs)
66 human 728734 NPIPB8 nuclear pore complex intera... XM_024450417.1 35.9% 26.7% (many diffs)
67 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022825.2 35.6% 26.9% (many diffs)
68 human 728734 NPIPB8 nuclear pore complex intera... XM_017023626.1 35.6% 26.9% (many diffs)
69 human 728734 NPIPB8 nuclear pore complex intera... XM_024450416.1 35.6% 26.9% (many diffs)
70 human 100288332 NPIPA5 nuclear pore complex intera... XR_932754.3 34.7% (many diffs)
71 human 440348 NPIPB15 nuclear pore complex intera... NM_001306094.1 33.6% 25.5% (many diffs)
72 human 440348 NPIPB15 nuclear pore complex intera... XM_011523498.3 33.6% 25.5% (many diffs)
73 human 440348 NPIPB15 nuclear pore complex intera... XM_017023248.1 33.6% 25.5% (many diffs)
74 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022823.2 32% 24.4% (many diffs)
75 human 102724993 LOC102724993 nuclear pore complex-intera... XR_001756354.2 28.4% (many diffs)
76 human 102724993 LOC102724993 nuclear pore complex-intera... XM_017030214.2 28% 25.2% (many diffs)
77 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022836.2 27.8% 24.6% (many diffs)
78 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022840.2 27.8% 24.6% (many diffs)
79 human 105369154 PKD1P6-NPIPP1 PKD1P6-NPIPP1 readthrough NR_123722.1 23.1% (many diffs)
80 human 728741 NPIPB6 nuclear pore complex intera... XM_005255743.3 17.9% 13.6% (many diffs)
81 human 440353 NPIPB12 nuclear pore complex intera... NM_001355401.1 17.7% 12.6% (many diffs)
82 human 440345 NPIPB4 nuclear pore complex intera... XM_024450289.1 17.6% 12.7% (many diffs)
83 human 728888 NPIPB11 nuclear pore complex intera... NM_001310137.2 14.7% 10.7% (many diffs)
84 human 100132247 NPIPB5 nuclear pore complex intera... NM_001135865.1 14.6% 10.4% (many diffs)
85 human 23117 NPIPB3 nuclear pore complex intera... NM_130464.3 14.6% 10.4% (many diffs)
86 human 613037 NPIPB13 nuclear pore complex intera... NM_001321892.1 14.5% 10.4% (many diffs)
87 human 440345 NPIPB4 nuclear pore complex intera... XM_017023247.1 14.5% 10.4% (many diffs)
88 human 440345 NPIPB4 nuclear pore complex intera... XM_024450285.1 14.5% 10.4% (many diffs)
89 human 728888 NPIPB11 nuclear pore complex intera... XM_024450420.1 14.3% 10.9% (many diffs)
90 human 440345 NPIPB4 nuclear pore complex intera... XM_024450284.1 13.6% 9.7% (many diffs)
91 human 440345 NPIPB4 nuclear pore complex intera... NM_001310148.1 13.5% 9.8% (many diffs)
92 human 440345 NPIPB4 nuclear pore complex intera... XM_017023244.2 13.5% 9.8% (many diffs)
93 human 440345 NPIPB4 nuclear pore complex intera... XM_024450283.1 13.2% 10% (many diffs)
94 human 105369154 PKD1P6-NPIPP1 PKD1P6-NPIPP1 readthrough NR_123721.1 12.8% (many diffs)
95 human 110006323 PKD1P4-NPIPA8 PKD1P4-NPIPA8 readthrough NR_146336.1 9.2% (many diffs)
96 human 109951030 PKD1P3-NPIPA1 PKD1P3-NPIPA1 readthrough NR_146231.1 9.1% (many diffs)
97 human 339044 PKD1P1 polycystin 1, transient rec... NR_036447.1 8.8% (many diffs)
98 human 110006322 PKD1P5-LOC105376752 PKD1P5-LOC105376752 readthr... NR_146331.1 5.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
765
ORF length:
696
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttttgttgc ttaggatatg aatggctgag cggaggctgt aaaacctggc
121actctgcttg ggttatcaat actctggctg accatcgtca tcgtgggact gactttggtg
181gaagtccttg gttacttatc attactgtgt ttctgagaag ttataaattt gccatctccc
241tctgcacaag ttacctttgt gtgtctttcc tgaagactat cttcccgtct caaaatggac
301atgatggatc cacggatgta cagcagagag ccaggaggtc caactgccgt agacaggaag
361gaattaaaat tgtcctggaa gacatcttta ctttatggag acaggtggaa accaaagttc
421gagctaaaat ccgtaagatg aaggtgacaa caaaagtcaa ccgtcatgac aaaatcaatg
481gaaagaggaa gaccgccaaa gaacatctga ggaaactaag catgaaagaa cgtgagcacg
541gagaaaagga gaggcaggtg tcagaggcag aggaaaatgg gaaattggat atgaaagaaa
601tacacaccta catggaaatg tttcaacgtg cgcaagcgtt gcggcggcgg gcagaggact
661actacagatg caaaatcacc ccttctgcaa gaaagcctct ttgcaaccgg tgcacttaca
721atttggtatt acctgggagt gaaaagaaat attacagcca tgccttgcca actttcttgt
781acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
841gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)