Construct: ORF ccsbBroadEn_00106

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009723.1_s300c1, BRDN0000389574
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARRB1 (408)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 408 ARRB1 arrestin beta 1 NM_004041.5 100% 100%
2 human 408 ARRB1 arrestin beta 1 NM_020251.4 98% 98% 997_998ins24
3 human 408 ARRB1 arrestin beta 1 XM_017017752.2 94.5% 94.5% 1146_1217del
4 human 408 ARRB1 arrestin beta 1 XM_017017753.1 93.4% 93.4% 4_5insGCGACAAAGGGACCC;1131_1202del
5 human 408 ARRB1 arrestin beta 1 XM_011545034.2 92.8% 90.9% (many diffs)
6 human 408 ARRB1 arrestin beta 1 XM_017017754.2 92.7% 92.7% 997_998ins24;1122_1193del
7 human 408 ARRB1 arrestin beta 1 XM_011545035.2 91% 89.1% (many diffs)
8 human 408 ARRB1 arrestin beta 1 XM_017017750.1 88.1% 86.3% (many diffs)
9 human 408 ARRB1 arrestin beta 1 XM_017017751.1 86.4% 84.6% (many diffs)
10 mouse 109689 Arrb1 arrestin, beta 1 NM_177231.2 89.7% 98.5% (many diffs)
11 mouse 109689 Arrb1 arrestin, beta 1 XM_006507200.2 88.6% 97.3% (many diffs)
12 mouse 109689 Arrb1 arrestin, beta 1 NM_178220.3 88% 96.6% (many diffs)
13 mouse 109689 Arrb1 arrestin, beta 1 XM_011241644.2 86.4% 94.1% (many diffs)
14 mouse 109689 Arrb1 arrestin, beta 1 XM_006507198.3 82% 88.6% (many diffs)
15 mouse 109689 Arrb1 arrestin, beta 1 XM_006507199.3 80.3% 86.9% (many diffs)
16 mouse 109689 Arrb1 arrestin, beta 1 XR_378207.3 58.4% (many diffs)
17 mouse 109689 Arrb1 arrestin, beta 1 XR_378208.3 57.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1320
ORF length:
1254
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CGACAAAGGG ACCCGAGTGT TCAAGAAGGC CAGTCCAAAT GGAAAGCTCA
121CCGTCTACCT GGGAAAGCGG GACTTTGTGG ACCACATCGA CCTCGTGGAC CCTGTGGATG
181GTGTGGTCCT GGTGGATCCT GAGTATCTCA AAGAGCGGAG AGTCTATGTG ACGCTGACCT
241GCGCCTTCCG CTATGGCCGG GAGGACCTGG ATGTCCTGGG CCTGACCTTT CGCAAGGACC
301TGTTTGTGGC CAACGTACAG TCGTTCCCAC CGGCCCCCGA GGACAAGAAG CCCCTGACGC
361GGCTGCAGGA ACGCCTCATC AAGAAGCTGG GCGAGCACGC TTACCCTTTC ACCTTTGAGA
421TCCCTCCAAA CCTTCCATGT TCTGTGACAC TGCAGCCGGG GCCCGAAGAC ACGGGGAAGG
481CTTGCGGTGT GGACTATGAA GTCAAAGCCT TCTGCGCGGA GAATTTGGAG GAGAAGATCC
541ACAAGCGGAA TTCTGTGCGT CTGGTCATCC GGAAGGTTCA GTATGCCCCA GAGAGGCCTG
601GCCCCCAGCC CACAGCCGAG ACCACCAGGC AGTTCCTCAT GTCGGACAAG CCCTTGCACC
661TAGAAGCCTC TCTGGATAAG GAGATCTATT ACCATGGAGA ACCCATCAGC GTCAACGTCC
721ACGTCACCAA CAACACCAAC AAGACGGTGA AGAAGATCAA GATCTCAGTG CGCCAGTATG
781CAGACATCTG CCTTTTCAAC ACAGCTCAGT ACAAGTGCCC TGTTGCCATG GAAGAGGCTG
841ATGACACTGT GGCACCCAGC TCGACGTTCT GCAAGGTCTA CACACTGACC CCCTTCCTAG
901CCAATAACCG AGAGAAGCGG GGCCTCGCCT TGGACGGGAA GCTCAAGCAC GAAGACACGA
961ACTTGGCCTC TAGCACCCTG TTGAGGGAAG GTGCCAACCG TGAGATCCTG GGGATCATTG
1021TTTCCTACAA AGTGAAAGTG AAGCTGGTGG TGTCTCGGGG CGGCCTGTTG GGAGATCTTG
1081CATCCAGCGA CGTGGCCGTG GAACTGCCCT TCACCCTAAT GCACCCCAAG CCCAAAGAGG
1141AACCCCCGCA TCGGGAAGTT CCAGAGAACG AGACGCCAGT AGATACCAAT CTCATAGAAC
1201TTGACACAAA TGATGACGAC ATTGTATTTG AGGACTTTGC TCGCCAGAGA CTGAAAGGCA
1261TGAAGGATGA CAAGGAGGAA GAGGAGGATG GTACCGGCTC TCCACAGCTC AACAACAGAT
1321ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1381acgaac

Download FASTA (ORF) (Full)

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